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The Oe-NC is a laboratory instrument used for the detection and quantification of nucleic acids, such as DNA and RNA. It employs the optical emission technique to measure the concentration of nucleic acids in a sample. The Oe-NC provides a reliable and accurate method for nucleic acid analysis in various research and diagnostic applications.

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14 protocols using oe nc

1

Chondrocyte Transfection and miR-532-5p

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After 0.25% trypsinization, chondrocytes were seeded onto 96-well plates. Upon 60–70% confluence, the cells underwent transfection with miR-532-5p mimic, OE-ABL1, and their negative control (mimic-NC and OE-NC) (GenePharma, Shanghai, China) plasmids using a LipofectamineTM 3000 kit (Invitrogen, Carlsbad, CA, USA) at a concentration of 75 nM. The cells were divided into control, mimic-NC, miR-532-5p mimic, mimic-NC + OE-NC, miR-532-5p mimic + OE-NC, mimic-NC + OE-ABL1, and miR-532-5p mimic + OE-ABL1 groups.
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2

Investigating miR-141 and LINC00242 in Gastric Cancer Cells

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Human GC cell lines, SGC7901, BGC823, MKN45, HGC27, and a normal gastric epithelial cell line GES-1 (ATCC, USA) were harvested in DMEM medium supplemented with 10% fetal bovine serum (FBS) (Gibco, USA), 100 U/mL penicillin, and 100 mg/mL streptomycin (5% CO2, 37 °C). Cultured HGC27 cells were treated with miR-141 mimic (#4464066), miR-141 inhibitor (#4464084), three anti-LINC00242 siRNA constructs (si-LINC00242-1, si-LINC00242-2, and si-LINC00242-3), expression vectors containing the FOXC1 gene (oe-FOXC1), and their negative control (NC) [mimic-NC, inhibitor-NC, scramble siRNA (si-NC), and empty vector (oe-NC)] (all purchased from Thermo Fisher Scientific, USA) alone or in combination as required by using lipofectamin 2000 reagents (11668-019, Invitrogen, USA) for 48 h according to the manufacturer’s instructions. The sense of si-LINC00242: 5′-UAUCUCCAAGGCAUGGAGC-3′; the anti-sense of si-LINC00242: 5′-GCUGGAUGCCUUGGAGAUA-3′. The sense of si-NC: 5′-UAUGGCUCGAACUACGAGC-3′; the anti-sense of si-NC: 5′-GCUCGUAGUUCGAGCCAUA-3′.
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3

RNA Interference and Overexpression Assays

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Short hairpin (sh)RNAs targeting HOTTIP (shRNA-HOTTIP-1/2) and its negative control (shRNA-NC), miR-774-5p mimic, mimic-NC, overexpression (oe)-PTBP1 plasmid, oe-NC plasmid, miR-744-5p inhibitor and inhibitor-NC were obtained from Shanghai GeneChem Co., Ltd. PTBP1 overexpression plasmid (oe-PTBP1) pcDNA3.1-LINC00885 was commercially constructed by Shanghai GenePharma Co., Ltd.; empty pcDNA 3.1 vector (oe-NC) was used as the control. A549 cells were transfected with shRNA-HOTTIP-1/2 (500 ng/µl), shRNA-NC plasmid (500 ng/µl), miR-774-5p mimic (40 nM), mimic-NC (40 nM), oe-PTBP1 (15 nM), oe-NC (15 nM), miR-744-5p inhibitor (40 nM) and inhibitor-NC (40 nM) using Lipofectamine® 2000 reagent (Thermo Fisher Scientific, Inc.) at 37°C according to the manufacturer's protocol. At 48 h post transfection, cells were harvested for subsequent experiments.
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4

Mesenchymal Stem Cell Transfection Protocol

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Eight centrifuge tubes were used, to which 95 µL of MSC basal culture medium was added. Separately, the si-NC, si-p75NTR, oe-NC, and oe-p75NTR plasmids, along with Lipofectamine 2000 (11,668,500, Invitrogen, USA), were mixed with MSC culture medium and incubated at room temperature for 5 min. The two tubes corresponding to each plasmid were combined and incubated at room temperature for 20 min. The resultant pre-mixture was evenly distributed into the transfection wells, followed by adding 800 µL of MSC basal culture medium. The cells were then incubated at 37 °C for 6 h, after which the complete culture medium was replaced. The si-NC, si-p75NTR (HG-Ri0072564), oe-NC, and oe-p75NTR plasmids were purchased from HonorGene (HG-RO0072566, China).
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5

Targeted Silencing of LUM Gene via siRNA Transfection

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The transfection of small interfering RNA (siRNA) targeting LUM (si-LUM-1 or si-LUM-2), its negative control (si-NC), FasL overexpressing pcDNA 3.1 (Oe-FasL) and the empty plasmid (Oe-NC) (all synthesized by GenePharma, Shanghai, China), was carried out using Lipofectamine 3000 (Invitrogen) in accordance with the product instructions. After 48 h of transfection, the cells were harvested and the expression aforementioned genes was tested by means of reverse transcription-quantitative PCR (RT-qPCR) and western blotting.
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6

Lentiviral Overexpression and Knockdown in HUVECs

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Primary HUVECs were cultured in Dulbecco’s Modified Eagle Medium (DMEM; Gibco) containing 10% FBS (Gibco) or HG medium (Gibco) at 37 °C with 5% CO2. Then, the HUVECs were seeded into 6-well plates with 2 mL DMEM for 1-day culture in an incubator. When confluence reached 80%, HUVECs from DMEM (Con) or HG medium were respectively infected with lentivirus expressing oe-Cbl, oe-Runx3, oe-STAT4, oe-JAK2, short hairpin RNA (shRNA) against STAT4 (sh-STAT4) (#1, #2), sh-Cbl(#1, #2), sh-NC and oe-NC (Genechem) according to the instructions (Invitrogen) with virus titer multiplicity of infection = 5.
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7

Breast Cancer Cell Line Transfection

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Breast cancer epithelial cell lines (MCF-7, MDA-MB-231, and MDA-10A) and human normal breast epithelial cell line HBL-100 were purchased from the cell bank of Typical Culture Preservation Committee of Chinese Academy of Science. The cells were incubated with DMEM, supplemented with 10% fetal bovine serum (FBS) and penicillin/ streptomycin (Gibco by Life Technologies, Grand Island, NY, USA) at 37°C with 5% CO2.
Next, MCF-7 cells in the logarithmic growth phase were plated into a 6-well plate (4 × 105 cells/well). When cell confluence reached 70%–80%, the cells were transfected with mimic-negative control (NC), miR-181d-5p mimic, inhibitor-NC, miR-181d-5p inhibitor, oe-NC, oe-HOXA5, sh-NC, or sh-HOXA5, based on the manuals of Lipofectamine 2000 (11668-019; Invitrogen, New York, CA, USA). All of the plasmids were purchased from Shanghai GenePharma (Shanghai, China).
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8

Modulating Osteoblast Differentiation via APT1

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oe-APT1 plasmid (pcDNA3.1-APT1) and its negative control oe-NC (pcDNA3.1-NC), and small interfering RNA si-APT1 and its negative control si-NC were synthesized by RiboBio. Cells in the logarithmic growth phase were transfected with oe-APT1, si-APT1, and their negative controls using Lipofectamine 2000 transfection kit (Invitrogen, Carlsbad, CA, USA).
The osteoblasts were allocated into 8 groups: (1) control (SAMR1 mouse osteoblasts without any treatment); (2) SOP (SAMP6 mouse osteoblasts without any treatment); (3) SOP + oe-NC (SAMP6 mouse osteoblasts transfected with oe-NC for 48 h); (4) SOP + oe-APT1 (SAMP6 mouse osteoblasts transfected with oe-APT1 for 48 h); (5) SOP + si-NC (SAMP6 mouse osteoblasts transfected with si-NC for 48 h); (6) SOP + si-APT1 (SAMP6 mouse osteoblasts transfected with si-APT1 for 48 h); (7) SOP + oe-APT1 + LDN-193189 (SAMP6 mouse osteoblasts cultured in 0.5 μmol/L LDN-193189 medium for 2 d after transfection with oe-APT1 for 48 h); (8) SOP + oe-APT1 + PBS (SAMP6 mouse osteoblasts cultured in an equal concentration of PBS for 2 d after transfection with oe-APT1 for 48 h).
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9

Investigating miR-381 and STC2 regulation

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miR-381 mimic, oe-STC2 and their negative controls (NC-mimic and oe-NC) were all obtained from GenePharma (Shanghai, China). Pre-miR-381 sequence was amplified with the forward primer designed as 5ꞌ-CGTGAATGATAGTGAGGAAC-3ꞌ and the reverse primer as 5ꞌ-GTGAACGATTTGCCACACACA-3ꞌ, and then inserted into the PLKO.3G vector. STC2-flag vector was constructed using the pCMV-3tag-3a plasmid for access of STC2 overexpression. Then, pCMV-STC2 (oe-STC2) and pCMV-3tag-3a (oe-NC) were transfected into cells using the Lipofectamine® 2000 reagent (Invitrogen, Carlsbad, USA), respectively. The RNA concentration was set as 50 nM, and the total RNA and proteins were extracted after 48 h of transfection.
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10

Epigenetic Regulation of RARB Expression

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The cells were transfected using Lipofectamine 2000 (11 668 030, Invitrogen Inc., Carlsbad, CA, USA) as per the manufacturer’s instructions. The siRNA targeting DNMT1 mRNA (si-DNMT1), DNMT3A mRNA (si-DNMT3A), DNMT3B mRNA (si-DNMT3B), RARB mRNA (si-RARB) and negative control (si-NC) were acquired from Shanghai GenePharma Co., Ltd. (Shanghai, China). The sequences of the siRNAs are shown in Table 1. The full-length RARB cDNA was subcloned into pcDNA3.1 vector (Invitrogen) for the construction of RARB overexpression (oe-RARB), with the empty vector as a negative control (oe-NC). After seeding and plating in 6-well plates for 1 d, the cells were transfected with the plasmids. After 48 h of transfection, the cells were stored for later use. Transfection efficiency was determined by RT-qPCR.
To suppress the expression of DNMT1, the cells were treated with 10 μM 5-aza-2′-deoxycitidine (5-AzaC) (189 825, Sigma-Aldrich Chemical Company, St Louis, MO, USA) 3 days before transfection. An equal volume of dimethylsulfoxide (DMSO) was applied as a control.
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