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6 protocols using ec plan neofluar 10 0

1

Immunofluorescence Microscopy Imaging Protocol

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Images from immunoperoxidase stained sections were captured using a Leica slide scanner and Zeiss Axioplan 2 microscope; from immunofluorescent stained human sections with a Zeiss Axioimager Z2 apotome; from immunofluorescent stained marmoset sections with an Axio Imager Z1 microscope (Zeiss) equipped with a Zeiss Axiocam HRm digital camera using the Axiovision software (v 4.8.1.0) at a resolution of 1024 × 1024 pixels. The objectives used were Zeiss EC-Plan Neofluar 10×0.3, #420 340–9901. Filter sets used for visualizing fluorescently-labeled cells were Zeiss 49 Dapi #488 049-9901-000, and Zeiss HQ Texas Red #000 000-1114-462. Images were adjusted for brightness and sharpness using Adobe Photoshop CS6 software. Planes of sectioning are illustrated in Supplementary Figure S1.
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2

Fluorescent Imaging of cGMP in Cells

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FRET/cGMP imaging of cells ex vivo was performed in flow chambers (ibidi) using an epifluorescence setup (Supplementary Fig. 3a) based on an inverted Axiovert 200 microscope (Zeiss) equipped with EC Plan NeoFluar 10×/0.3, LD Plan NeoFluar 20×/0.4 air, and Plan NeoFluar 40×/1.3 oil objectives and optional 1.6× Optovar magnification (Zeiss). The imaging setup contains a light source with excitation filter switching device (Oligochrome, TILL Photonics GmbH), a DualView beam splitter with 516 nm dichroic mirror and CFP and YFP emission filters (480/30 nm and 535/40 nm) (Photometrics), and a CCD digital camera (Retiga 2000R, QImaging)22 (link). Images were acquired at 0.2 Hz or 1 Hz at room temperature. Adherent cells were exposed to flow at a shear rate of 500 s−1 using a syringe pump (B-Braun). Platelet thrombi and VSMCs were superfused at room temperature with platelet Tyrode buffer and imaging buffer (in mM: 5 HEPES, 140 NaCl, 5 KCl, 1.2 MgCl2, 2.5 CaCl2, 5 d-glucose, pH 7.4), respectively. Drugs were applied via two sample loops connected in series and controlled by injection valves (Pharmacia V-7, GE Healthcare).
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3

Cellulose Analysis via CLSM and Carbotrace 480

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CLSM analysis of defibrillated cellulose samples using Carbotrace 480 was processed using the protocol of Zitzmann et al. [15 (link)]. The samples (20 mg) were mixed and incubated with 50 µL of Carbotrace 480: phosphase buffer solution pH 7.4 (ratio 1:1000) for 30 min. The CLSM images were acquired using a Zeiss LSM980 confocal microscope, AxioObserver Z1, using ZEN 3.4 (blue edition) software and either an EC Plan-Neofluar 10×/0.3 or a Plan Apochromat 20×/0.8 objective. All the samples were excited with a 405 nm laser using a 405 nm main beam splitter, and the emissions were collected from 411 to 694 nm in bins of 8.9 nm.
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Adipocyte Lipid Droplet Visualization

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The differentiated adipocytes were fixed in 2% PFA (Merck KGaA, 104005) for 20 min and washed once with PBS. Lipid droplets were stained with 2 μM of Bodipy (Invitrogen, Waltham, MA, USA, D3922) for 45 min and then washed three times with PBS. The cells were counterstained with DAPI Vectashield mounting medium (Vector Laboratories, Burlingame, CA, USA, VEC-H-1200), and images were captured using an Axio Imager D2 fluorescence microscope (Light source: X-cite 120Q (EXFO Photonic Solutions Inc., Mississauga, ON, Canada); objectives used: EC-Plan Neofluar 10×/0.3 (420340-9901, Carl Zeiss), Plan-Apochromat 40×/0.95 Korr (440654-9902, Carl Zeiss); camera used: AxioCam MRm (Carl Zeiss, Oberkochen, Germany); excitation and emission filters used: filter set 49 (424931, Zeiss), filter set 38 HE (424931, Zeiss)).
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5

Binding of E2-GFP to PLA Microparticles

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E2-GFP was added to 0.5 mL of suspension of microtraps with concentration of microparticles equal to 0.1 mg/mL in 50 mM Tris-HCl, pH 8.0. The final concentration of E2-GFP was 0.01–0.1 mg/mL. In the control experiment, instead of E2-GFP, the same molar amount of GFP was used. The resulting mixtures were incubated for 1 h at 22 °C at constant stirring. After that, the PLA microparticles were precipitated by centrifugation at 3000 rpm for 15 min, washed two times in 50 mM Tris-HCl, pH 8.0, and carefully resuspended in 0.5 mL of the same buffer. The resulting suspension was analyzed by SDS PAGE and Laser Scanning Confocal Microscopy. The images were captured using an inverted confocal laser scanning microscope LSM 510 Meta (Zeiss, Jena, Germany), with lens EC Plan-Neofluar 10×/0.3 (Zeiss, Jena, Germany). Laser with a wavelength of 488 nm was used to excite the fluorescence, a 505–550 nm filter was used to detect GFP fluorescence. In transmitted light images were obtained using the Differential Interference Contrast (DIC) method.
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6

Microprojectile Bombardment Assay for Arabidopsis

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Microprojectile bombardment assays were performed essentially as described [17] . 10day-old seedlings true leaves of Arabidopsis lines were bombarded with 1 nm gold particles (Bio-Rad) coated with plasmid DNA, using a Biolistic PDS-1000/He particle delivery system (Bio-Rad). Bombardment sites were imaged 24 h post bombardment by confocal microscopy (Zeiss LSM800) with a 10x (EC Plan-NEOFLUAR 10× 0.3; Zeiss) or 20x dry objective (Plan-APOCHROMAT 20x/0.8; Zeiss). Data were collected from at least 2 independent bombardment events, each of which consisted of leaves from at least 3 individual plants. The median mobility (number of cells) for different lines was compared in R statistical computing language v4.0.3 by a bootstrap method [53] (link).
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