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4 protocols using cd4 fitc rpa t4

1

Characterizing CAR T-cell Persistence

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These methods apply to the data shown in Figure 2jk. Cryopreserved patient peripheral blood mononuclear cells (PBMCs) collected one month after CAR T-cell infusion were thawed and then washed once with FACS buffer containing 0.4% BSA and 0.1% weight/volume sodium azide in PBS. Samples were Fc blocked with normal mouse IgG (Invitrogen) and stained with CD3-APC Cy7 (UCHT1, eBioscience), CD4 FITC (RPA-T4, BD), CD8 PECy7 (RPA-T8, BD), 7-amino actinomycin D (7AAD, BD), and anti-CAR-APC antibody (the anti-CAR antibody was generated by Kite Pharma, Inc.). The anti-CAR antibody bound equivalently to the linker in the scFv of both Hu19-CD828Z and FMC63–28Z (Supplementary Figure 3)35 . Samples were acquired using a BD LSR II with Diva software and data was analyzed using FlowJo version 10. The gating strategy is shown in Supplementary Figure 7.
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2

Phenotyping T Regulatory Cells

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PBMC surface antigens were stained with CD4-FITC (RPA-T4), CD25-APC (MA251), Ki67-PE (B56), and CD127-PE (hIL-7R-M21) (BD Bioscience, San Diego, CA). After washing to remove unbound antibody, cells were incubated on ice for 30 minutes in fixation/permeabilization buffer (eBioscience, San Diego, CA). Cells were washed again with 1X permeabilization buffer (eBioscience), pelleted, and stained with FOXP3-APC (PCH101, eBioscience). Samples were acquired on BD FACS Calibur (BD, San Diego, CA) and analyzed with FlowJo (TreeStar, Ashland, OR). TRegs were defined as CD25+FOXP3+ of CD4+ lymphocytes.
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3

Characterizing CAR T-cell Persistence

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These methods apply to the data shown in Figure 2jk. Cryopreserved patient peripheral blood mononuclear cells (PBMCs) collected one month after CAR T-cell infusion were thawed and then washed once with FACS buffer containing 0.4% BSA and 0.1% weight/volume sodium azide in PBS. Samples were Fc blocked with normal mouse IgG (Invitrogen) and stained with CD3-APC Cy7 (UCHT1, eBioscience), CD4 FITC (RPA-T4, BD), CD8 PECy7 (RPA-T8, BD), 7-amino actinomycin D (7AAD, BD), and anti-CAR-APC antibody (the anti-CAR antibody was generated by Kite Pharma, Inc.). The anti-CAR antibody bound equivalently to the linker in the scFv of both Hu19-CD828Z and FMC63–28Z (Supplementary Figure 3)35 . Samples were acquired using a BD LSR II with Diva software and data was analyzed using FlowJo version 10. The gating strategy is shown in Supplementary Figure 7.
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4

Activation and Cytokine Profiling of PBMCs

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Peripheral blood mononuclear cells (1 × 106) were stimulated with PMA (500 ng/ml), ionomycin (2 μg/ml), and brefeldin A (10 μg/ml) for 5 h at 37°C in 5% CO2. The surface were stained with CD3-BV421 (UCHT1), CD8-percp-cy5.5 (RPA-T8), and CD4-FITC (RPA-T4) (BD Biosciences), and intracellular staining was performed using anti-IL-17A-PE (N49-653), IL-10-APC (JES3-19F1) (BD Biosciences), IL-4-APC (8D4-8), TGF-β1-PE (TW4-6H10), TNF-α-PE-cy7 (MAb11), and IFN-γ-PE-cy7 (4S.B3) (Biolegend, San Diego, CA, USA) and the foxp3/transcription factor staining buffer set (eBioscience, San Diego, CA, USA) according to the manufacturer’s protocols. Unstimulated cells were used as a negative control.
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