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8 protocols using ab3484

1

Plasmid-mediated Hepatitis B Virus Study

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The plasmid encoding pAAV‐HBV1.2 was kindly provided by Pei‐Jer Chen from the Department of Internal Medicine, National Taiwan University Hospital, National Taiwan University College of Medicine. HBV promoters including X promoter (XP), core promoter (CP), PreS1 promoter (preS1P), PreS2 promoter (preS2P) luciferase report vectors (pGL3‐Xp, pGL3‐S1p, pGL3‐S2p and pGL3‐Cp) were created in our laboratory according to previous studies.37 pHBV1.37 plasmid was generated in our laboratory according to previous studies.37 The antibodies used were listed: anti‐p‐ERK (4370S, Cell Signaling Technology, USA), anti‐ERK (4695S, Cell Signaling Technology, USA), anti‐HNF1α (89670S,Cell Signaling Technology,USA), anti‐HNF4a(3113S, Cell Signaling Technology,USA), anti‐C/EBPa (8178S, Cell Signaling Technology, USA), anti‐PPARa (ab3484,abcam,USA), anti‐NEDD8 (ab81264, abcam, USA), anti‐GAPDH (2118S, Cell Signaling Technology, USA), anti‐Actin (A1015,DAWEN BIOTECH,CHINA) Normal Rabbit IgG (WD‐GAR007, DAWEN BIOTECH,CHINA),Normal Mouse IgG (GAM007,MULTI SCIENCES,CHINA).
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2

Danqi Pills: Standardized Herbal Therapy

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Danqi Pills (16120005) were purchased from TongrenTang (Beijing, China) and has a strict quality control by Pharmacopeia of the People’s Republic of China (Ministry of Health of the People’s Republic of China Pharmacopeia Committee, 2010) and definite clinical efficacy without known side effects. DQP is composed with the root of red-rooted salvia (S. miltiorrhiza Bge) and Panax notogenseng (Notoginseng Radix et Rhizoma). The fingerprint of DQP was analyzed by high-performance liquid chromatography (Supplementary Figure S1).
Medium 199 (M199, 10-060-CVR), matrigel (356231), and fetal bovine serum (FBS, 35-081-CV) were purchased from Corning (United States). Antibody against GAPDH (5174S) was purchased from Cell Signaling Technology (United States), antibodies against CD36 (ab64014), CPT1A (ab128568), VEGF-2 (ab10972), PPARα (ab3484) were obtained from Abcam (United States). CD31 (GB12063) was purchased from Servicebio (China). Secondary HRP-conjugated anti-mouse and anti-rabbit antibodies (Beijing TDY Biotech LTD, E009, and E011, respectively). Etomoxir (B1526025) was purchased from Aladdin (China). Trimetazidine (2010447) were purchased from Servier Pharmaceutical Company Limited (Tianjin, China). Calcinin (354216) was purchased from BD. Cell Counting KIT-8 was purchased from Japan (CCK-8, Dojindo Laboratories Inc., Kumamoto, Japan).
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3

Protein Expression Analysis Protocol

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The total protein isolation, denaturing, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferring, blocking, incubation, visualization, and quantification assay were based on our published methods (21 (link)). The following antibodies were used: antibodies against FXR (1:500, bs-12867R, Bioss), TGR5 (1:500, NBP2-23669SS, Novus), SREBP1 (1:800, ab28481, Abcam), PPARA (1:1000, 66836-1-Ig, Proteintech), phosphor-PPARA (P-PPARA, S12) (1:800, ab3484, Abcam), and GAPDH (1:1,000, 2118S, Cell Signaling Technology).
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4

PPAR-α Signaling Pathway Analysis

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The antibody against PPARα (peroxisome proliferator-activated receptor alpha, 66836-1-Ig) was purchased from Proteintech Co. (Chicago, USA). The antibodies against SREBP1 (sterol regulator element-binding protein 1, ab28481) and P-PPARα (phosphor-PPARα, S12, ab3484) were purchased from Abcam Co. (Cambridge, UK). The antibody against GAPDH (2118S) was purchased from Cell Signaling Technology Co. (MA, USA). The animal treatment and experimental procedures are carried out according to the “Guidelines for the Care and Use of Experimental Animals” issued by the National Research Council. All animal care and use procedures have been approved by the Animal Ethics and Welfare Committee of Guangdong Ocean University (license number: DOU-AEWC-20180063), and all authors have clearly stated that they have followed these guidelines.
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5

Western Blot Analysis of Hepatic Proteins

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Huh-7 or HepG2 cells were collected in radioimmunoprecipitation assay (RIPA) (Beyotime Biotechnology, Shanghai, China) lysis buffer containing 1% phenylmethylsulphonyl fluoride (PMSF) (Beyotime Biotechnology, Shanghai, China) on ice for 10 min. The cell lysates were removed and placed into 1.5 ml Eppendorf tubes and centrifuged at 12,000 rpm for 15 min. Next, the supernatants were used to determine the total protein concentration using the bicinchoninic acid (BCA) (Beyotime Biotechnology, Shanghai, China) assay. Protein samples (25 μg) were loaded into each well and separated with 5% concentrated gels and 12% separation gels. After blocking the membranes with 5% defatted milk, rabbit anti-human FABP1 (1 : 1000, SAB1410361, Sigma-Aldrich), mouse anti-human caspase 3 (1 : 1000, MAB10753 Sigma-Aldrich), mouse anti-human CPT1A (1 : 1000, ab128568, ABCAm), rabbit anti-human PPAR-α (phospho S12, 1 : 1000, ab3484, ABCAm), and rabbit anti-human SREBP1 (1 : 1000, ab191857, ABCAm) antibodies were added and incubated at 4°C overnight. Next, the membranes were incubated with goat anti-rabbit (12348, Sigma-Aldrich) or goat anti-mouse (12349, Sigma-Aldrich) secondary antibody (1 : 5000) for 2 h at room temperature and developed with enhanced chemiluminescence (ECL) kit (Millipore, Burlington, MA, USA). The gels were imaged using the Syngene gel imager (Frederick, MD, USA).
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6

Placental Protein Extraction and Analysis

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The frozen placenta was thawed, washed with radioimmunoprecipitation assay buffer (p0013b, Beyotime, Beijing, China), and cut into 2–3 mm pieces, followed by homogenization and ultrasonication. Then, the supernatant was used for the quantification of protein concentration using bicinchoninic acid assay (p0010s, Beyotime, Beijing, China). The protein samples were separated with 8–10% sodium dodecyl sulfate polyacrylamide gel electrophoresis, transferred to polyvinylidene fluoride membrane, washed with TBST buffer thrice for 5 min each time, and then blocked with 5% skimmed milk for 2 h. The samples were then incubated with primary antibodies against PPARγ (CST, #2443, 53 kDa, 1:1000), PPARα (ab3484, 52 kDa, 1:1000; Abcam, Cambridge, UK), ANGPT1 (ab8451, 57 kDa, 1:500; Abcam, Cambridge, UK), VEGF (CY2367, 28 kDa, 1:1000; Abways, Kärnten, Austria), β-actin (AB0033, 42 kDa, 1:5000; Abways, Kärnten, Austria), HIF1α (#36169, 120 kDa, 1:1000; CST, Danvers, MA, USA), PIGF/PIGF (ab196666, 25 kDa, 1:500; Abcam, Cambridge, UK), TNFα (#3707, 17 kDa, 1:1000; CST, Danvers, MA, USA) at 4 °C for 10 h. After washing thrice, the samples were incubated with secondary antibody (1:10000; Abways, Kärnten, Austria) at room temperature for 1 h. The bands were captured using enhanced chemiluminescence detection reagent and Tanon imaging system (Tanon-5200Multi, Shanghai, China).
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7

Protein Analysis of Rat Ventricular Extracts

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The protein concentration of ventricular extracts was measured using the bicinchoninic acid assay (BCA1, Sigma-Aldrich, USA). 30 μg of total extract protein from rat ventricular extracts were separated by SDS-PAGE and then wet transferred onto nitrocellulose membranes (HATF00010, Millipore, USA). Membranes were immunoblotted with primary antibodies against UCP1 (ab10983, Abcam, USA), AMPK α1 + AMPK α2 (ab80039, Abcam, USA), phosphor-AMPK α1 (T183) + AMPK α2 (T172) (ab133448, Abcam, USA), mTOR (2972S, Cell Signaling Technology, USA) and phosphor-mTOR (S2448) (2971, Cell Signaling Technology, USA), PPARα (ab24509, Abcam, USA) and phosphor-PPARα (S12) (ab3484, Abcam, USA). Protein bands were detected using horseradish peroxidase-conjugated secondary antibodies using chemiluminescent detection reagent (sc-2048, Santa Cruz, USA). GAPDH (ab9482, Abcam, USA) was used as normalization. Bands were quantitatively analyzed with ImageJ software.
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8

Adipogenesis Pathway Protein Analysis

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Antibodies against β-actin (#4967), AMPKα (#5832), and phospho-AMPKα at Thr172 (#2535) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against FABP4 (ab92501), PPARγ (ab41928), PGC1α (ab54481), PRDM16 (ab106410), UCP1 (ab10983), and PPARα (ab3484) were purchased from Abcam (Cambridge, UK). Goat anti-rabbit IgG HRP (A0208) and goat anti-mouse IgG HRP (A0216) secondary antibodies were bought from Beyotime Institute of Biotechnology (Haimen, Jiangsu, China).
Insulin (91077C), indomethacin (I7378), dexamethasone (D4902), PA (P4060), 3-isobutyl-1-methylxanthine (I5878), triiodothyronine (T3) (I2877), DMSO (D2650), Polybrene (H9268) and Oil-Red O (O0625) were purchased from Sigma (St Louis, MO, USA). DMEM (11960–044) and Pierce™ ECL Western Blotting Substrate (#32109) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). GW6471 (4618) and SR59230A (1511) were purchased from Tocris Bioscience (Avonmouth, Bristol, UK). Mito Stress Test Kit (103015–100) was purchased from Agilent Technologyies (Wilmington, USA).
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