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Axio scan z1

Manufactured by Olympus

The Axio Scan.Z1 is a digital slide scanner designed for high-throughput digitization of histological and cytological samples. It captures high-resolution images of entire slides with a focus on maintaining image quality and consistent staining. The device is capable of scanning slides at various magnification levels to facilitate a range of applications in the life sciences and medical research fields.

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2 protocols using axio scan z1

1

Histological Analysis of Esophageal Regeneration

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For histological analysis of esophageal regeneration, esophageal tissues were excised along with tracheal tissue to support the esophagus. For routine staining, tissues were fixed with cooled acetone. To obtain cryosections, the tissue was perfused with sucrose solution, embedded in optimal cutting temperature compound, and frozen at −80 ​°C. Tissue sections were then stained with hematoxylin and eosin (H&E) and Masson's trichrome stain. Stained sections were scanned using an Axio Scan.Z1 (Carl Zeiss Microscopy).
For immunohistochemical analysis, the tissue samples were fixed in 4% PFAPFA overnight and embedded in paraffin. To detect smooth muscle regeneration and vascularization, the esophageal tissue sections were stained with anti-SM22α, anti-IL-B4, anti-vimentin, and anti-desmin antibodies. Epithelium of esophageal tissues were stained with anti-cytokeratin 14, and Macrophages were stained with anti-CD68 antibody. The secondary antibodies used were goat anti-mouse antibody conjugated with Alexa Fluor 488 or 568 and streptavidin conjugated to Alexa Fluor 488, and DAPI was used to stain the nuclei. The stained sections were visualized under a laser confocal microscope (Olympus FluoView FV1000) and an Axio Scan.Z1 (Carl Zeiss Microscopy). The fluorescence levels were quantified in a high-power field using ImageJ software.
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2

Quantifying Microglial Dynamics with Fluorescence Microscopy

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Fluorescence microscopy was performed using a confocal spinning disk microscope (Zeiss, Germany). Double-positive cells (Ki67+ and Iba-1+ positive) were counted on 6–12 representative images (267.20 × 267.73 µm) for each sample and an average was calculated. Bright-field microscopy was done using an olympus light microscope (BX51) and with a Axio Scan.Z1 (Zeiss, Germany). For 3D reconstruction of microglia, 70-μm vibratome sections from adult brain tissue were stained overnight with anti-Iba-1 (1:500) at 4 °C, followed by Dylight 594-conjugated secondary antibody (1:1000) overnight at 4 °C. Nuclei were counterstained with Hoechst. Confocal images were taken with a Leica Sp5 AOBS confocal microscope (Leica, Mannhein, Germany), using a HCX PL APO CS 40.0 × 1.25 UV oil objective. Three cells per mouse and five mice per condition were reconstructed. For live cell imaging, primary cultured microglia were seeded in an eight-well chamber (iBidi). Cell death was monitored by propidium iodide (PI) or Sytox Green uptake. Live cell imaging was performed on a Zeiss confocal spinning disk (Zeiss, Germany). Analysis was performed on Fiji, a public domain imaging software.
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