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Imagescope 11

Manufactured by Leica
Sourced in Australia, United States

ImageScope-11.2 is a digital slide viewing and analysis software from Leica. It provides essential tools for viewing and managing digital pathology images. The software supports various file formats and offers basic image manipulation and annotation capabilities.

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4 protocols using imagescope 11

1

Corpus Callosum Atrophy and Tau Burden Quantification

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Given that atrophy of the corpus callosum is a common pathologic feature in CBD [62 (link)], the thickness of the corpus callosum was measured as previously described [33 (link)]. Hematoxylin and eosin stained sections of the anterior cingulate gyrus, obtained from coronal brain slices at the level of nucleus accumbens, were scanned on the ScanScopeXT (Aperio Technologies, Vista, CA). The ImageScope-11.2 (Aperio Technologies) ruler feature was used to measure the thickness at a consistent location in all cases as shown in Supplementary Figure 1 (Online Resource 2).
To quantify the tau burden, digital image analysis was performed in select brain regions [28 (link)]. CP13-stained sections of the pons, medulla, and cerebellar hemisphere were scanned on the ScanScopeXT. The pontine base, inferior olivary nucleus, and cerebellar white matter were annotated using ImageScope-11.2 and analyzed in Spectrum-11.2 (Aperio Technologies) using a custom-designed color deconvolution algorithm to detect only CP13-positive pathology as shown in Supplementary Figure 2 (Online Resource 3). Total tau burden was expressed as a percent ratio of the area of immunoreactive pixels to the total area of the annotated region.
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2

Quantifying Pulmonary Mucus in Mice

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For mucus analysis, entire midline PAS-stained sections of mouse lungs were scanned, and analysed using ImageScope 11.2 (Aperio Technologies, Leica Biosystems, Mount Waverley, VIC, Australia). Colour deconvolution was used to separate PAS (pink) from haematoxylin (blue). Thresholding was performed on the acid Schiff's channel to select only mucoid staining and to minimise background selection. Data are presented as the percentage of PAS-positive pixels divided by PAS-positive pixels and hematoxylin-positive pixels (total tissue area).
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3

Cardiac Fibrosis and Vasculature Assessment

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Cardiomyocyte cross-sectional area (CCSA) was measured on wheat germ agglutinin (WGA) stained paraffin sections. Capillary/myocyte ratio was measured by dividing the counted amount of capillaries on five views of 100 × 100 μm by the expected amount of cardiomyocytes (calculated as area of analysis divided by mean CSSA). For assessment of the amount of fibrosis, Masson’s trichrome staining (all time points) and Sirius red staining (as confirmation, only 6 months time point) was performed on paraffin whole sections of the heart, and analyzed using Image Scope 11 (Aperio Technologies, Vista, CA). The amount of fibrosis was quantified, per ventricle, as the blue-stained (Masson’s trichrome) or red-stained (Sirius red) percentage of the total tissue area, excluding major vessels. Pulmonary vascular histology was qualitatively assessed on Verhoeff stained paraffin sections of the left lung, based on previous experience (van der Feen et al., 2017 (link)). Macrophage infiltration was assessed by means of CD69 immunohistochemistry staining.
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4

Paraffin Embedding and Histological Analysis

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Axis slices of fresh tissues were fixed in 10% formalin (pH 6.8–7.2) and processed in Tissue-Tek VIP® (Sakura Finetek USA Inc., Torrance, CA, USA) using following sequential treatments: 70% ethanol for 50 s, 95% ethanol for 50 s (2 cycles), 100% ethanol for 33 s (3 cycles), toluene for 60 s (2 cycles), and paraffin for 45 s at 63 °C (4 cycles). For deparaffinization, tissues were dipped in xylene for 5 min (2 cycles), 100% ethanol for 2 min, 95% ethanol for 2 min, and 70% ethanol for 2 min, followed by rehydration in deionized water. Tissues were embedded in paraffin using Cryo-therm (Lipshaw, Tucker, GA, USA) and 5–7 µm thick sections were made using microtome (Finesse ME, Thermo Electron, Waltham, MA, USA). These were then stained with 1% toluidine blue–O, sectioned, dehydrated by serial quick dips in 70%, 95%, and 100% ethanol, and xylene [53 ]. Slides were scanned with ScanScope CS (Aperio Technologies Inc., Buffalo Grove, IL, USA) at different magnifications, 40x being the maximum. The digital images were analyzed for cell number and cell layers using ImageScope 11 (Aperio Technologies Inc., Buffalo Grove, IL, USA), and for cell size by ImageJ [54 (link)]. Three independent biological replicates were analyzed at each stage from each genotype.
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