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7 protocols using caspase 3

1

Histological Tumor Analysis in Mice

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Tumors from mice in the antitumor efficacy treatment protocol were collected and fixed in 10% (v/v) neutral buffered formalin solution (4% formaldehyde) at 4°C overnight before being transferred to 70% ethanol and submitted to the OHSU Histopathology Shared Resource Core for tissue clearing, slicing (5 μm), and subsequent staining. Stains performed were hematoxylin and eosin (H&E), Caspase-3 (Promega), and γH2AX (Cell Signaling Technologies). Antibodies were diluted according to supplier recommendations before staining. Imaging was performed on a Zeiss Axio Scan.Z1 Slide Scanner by the OHSU Advanced Light Microscopy Core at 20X.
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2

Immunocytochemistry Validation of Implanted RPE Cells

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Some paraffin sections obtained from implant regions were processed for immunocytochemistry against pan-cytokeratin (1:100; catalog number ab11213, Abcam), ezrin (1:50; CST), MCT-1 (1:50; LifeSpan Biosciences), Ki67 (1:50; Sigma), phosphohistone H3 (1:50; Millipore), caspase-3 (1:50, Promega), and human-specific antibody SC121 (1:50; Stem Cells) to verify the presence of human RPE cells on the subretinally implanted cell carriers. Pan-cytokeratin was visualized with the Biotin-ExtrAvidin-AEC chromogen system. All other primary antibodies were visualized using Alexa Fluor secondary antibodies as mentioned above.
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3

Quantifying Caspase Activity and Apoptosis

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Commercial Caspase Activity Assay kits were used to assess the activities of caspase‐3 (Promega, Madison, WI, USA) and caspase‐8 and caspase‐9 (Beyotime, Shanghai, China). An equal amount of total protein extract was incubated at 37°C overnight with either Ac‐DETD‐PNA for the caspase‐3 assay, Ac‐IETD‐pNA for the caspase‐8 assay or Ac‐LEHD‐pNA for the caspase‐9 assay. Release of pNA was determined by absorbance at 405 nm. The relative activity of caspases was calculated as follows: caspase activity = (mean experimental absorbance/mean control absorbance) × 100%. All procedures were performed three times.
Apoptosis was detected by fluorescein isothiocyanate (FITC)‐Annexin V/propidium iodide (PI) double staining (Invitrogen). After 48 h of treatment with SP or aprepitant, the cells were washed twice with PBS. The cells were labelled with FITC‐Annexin V and PI for 10 minutes in the dark and cellular fluorescence was measured using a FACScan flow cytometer (Becton Dickinson). Each experiment was performed in triplicate.31
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4

Histological Processing and Imaging

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Organs
and tumors were collected from each
animal, weighed, and placed into formalin solution (10% by volume
in PBS) at 4 °C for 2–3 days. The organs were then transferred
to 70% ethanol solution until further processing by the Histopathology
Shared Resource at OHSU.
Samples were paraffin embedded, sliced,
and prepared according to the required staining protocol, which included
either no staining, hematoxylin and eosin (H&E), or caspase-3
(CC3; Promega, 1:1500 dilution). Slides produced from staining were
imaged with assistance from the Advanced Light Microscopy Core at
OHSU. Scanned images of each slide were taken on a Leica Axios Imaging
system (Leica, Wetzlar, Germany) using a 10X objective.
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5

Histopathological Analysis of Tumor Samples

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Tumors from mice in the tumor volume treatment protocol were collected and formalin fixed at 4 °C overnight before being transferred to 70% ethanol and submitted to the OHSU Histopathology Shared Resource Core for tissue clearing, slicing (5 μm), and subsequent staining. Stains performed were hematoxylin and eosin (H&E), Caspase-3 (Promega), and Ki67 (Cell Marque). Antibodies were diluted in accordance with supplier recommendations before staining. Imaging was performed on a Zeiss Axio Scan.Z1 Slide Scanner by the OHSU Advanced Light Microscopy Core at 20 ×.
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6

Flagellin-induced Cell Death Pathways

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Ultrapure recombinant flagellin and neutralizing anti-TLR5 were purchased from Invitrogen. FasL and the mitochondrium dye DiOC 6 were from Enzo Life Sciences. TNF and IL-2 were purchased from PeproTech, the anti-flag M2 antibody, RNase A, propidium iodide (PI), necrostatin-1 and paclitaxel from Sigma-Aldrich. The antibodies were purchased from the following companies: Biolegend (APC-labelled anti-Fas (DX2) and anti-TNFR The luminescent substrate caspase-3 was from Promega, anti-CD11c for flow cytometry analysis was from Biolegend, the CellTracker was from Lifetech, and Z-Vad were from Apexbio.
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7

Colon Cancer Cell Line HT-29 Culture

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Human colon cancer cell line HT-29 (Korean Cell Line Bank, Seoul, Korea) was maintained in RPMI-1640 supplemented with 10% fetal bovine serum (Gibco BRL, USA), 100 U penicillin, and 100 µg/ml streptomycin. The cells were cultured at 37°C in a humidified chamber containing 5% CO 2 . α-Toxin (α-hemolysin), and anti-α-toxin and anti-Bcl-2 antibodies were purchased from Sigma (MO, USA). Caspase 3 (Promega, WI, USA) and caspase 9 (R&D Systems, MN, USA) activity assay kits were used in this study.
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