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41 protocols using k801 200

1

Dual-Luciferase Assay of YTHDF1-3'UTR Regulation

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The YTHDF1-3’untranslated region (3’UTR) containing the binding sites with
miR-376c was inserted into the pGL3 plasmid (Promega, Madison, WI, USA). The
YTHDF1-3’UTR-mutant (MUT) fragment of the binding site mutation was constructed
by point mutation method using point mutation kits (Robustnique Corporation
Ltd., Tianjin, China). “UAUUUGUACUUUUUCUAUGUA” was mutated to
“UAUAUCUCAAUUAGAUACAA” on the YTHDF1-3’UTR and inserted into the pGL3 plasmids
to construct the YTHDF1-MUT. The indicated plasmids and Renilla plasmid were
introduced with miR-376c mimic or NC-mimic into HEK293 T cells (American Type
Culture Collection, Manassas, VA, USA). Cells were lysed following 48 h of
transfection under the instructions of a luciferase detection kit (K801-200,
BioVision, Inc., Exton, PA, USA). Dual-luciferase reporter gene assays were
carried out with the help of the Dual-Luciferase Reporter Assay System
(Promega). Renilla activity served as the internal control.
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2

Regulation of FASN by miR-424-5p

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The mutant (Mut) 3′-UTR and wild-type (WT) sequences of FASN were intensified and placed in luciferase reporter pmirGLO (Promega, US) to construct FASN-Wt and FASN-Mut vectors. Lipofectamine 2000 (Promega, US) was used for the cotransfection of FASN-Wt or FASN-Mut with miR-424-5p mimics or NC mimics in hESC-derived neurons. After 48 h, the luciferase activities of transfected hESC-derived neurons were examined by employing a luciferase detection kit (K801-200; BioVision Milpitas, USA).
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3

Evaluating NRSF and EGFR Regulatory Interactions

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We imported the synthesized NRSF and EGFR 3′ UTR gene fragments into the pmir-reporter gene (Beijing Huayueyang Biotechnology). NRSF-mut and EGFR-wt design binding site mutations based on NRSF-mu and EGFR-mu. Epidermal growth factor receptor-WT and MUT were co-transfected into HEK293 T cells with NRSF (Shanghai Beinuo Biotechnology). After 48 hours of transfection, cells were collected and cleaved using a luciferase detection kit (K801-200; Biovision).
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4

Luciferase Reporter Assay of miR-9-3p Binding to MDM2 3'UTR

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The synthesized MDM2 3′ untranslated region (UTR) gene fragment MDM2-WT and the MDM2-MUT mutated at the binding site were constructed into a pMIR-reporter plasmid (Beijing Huayueyang Biotechnology, Beijing, China). Luciferase reporter plasmids were co-transfected with miR-9-3p into HEK293T cells (Shanghai Beinuo Biotechnology, Shanghai, China). Then 48 h subsequent to transfection, cells were lysed, and detected using a luciferase detection kit (K801-200; Biovision, Mountain View, CA, USA).
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5

Verifying miR-132 Regulation of NRF2

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The biological prediction website microRNA.org was used to analyze target genes of miR-132. We verified whether NRF2 was a direct target gene of miR-132 using a dual-luciferase reporter gene assay. Artificially synthesized NRF2 3′ untranslated region (3′UTR) gene fragments were introduced into the reporter plasmid pMIR-reporter (Beijing Huayueyang Biotechnology Co., Ltd., Beijing, China) using the endonuclease sites SpeI and Hind III. The complementary sequence mutation sites of the seed sequence were designed based on the wild-type (WT) NRF2. T4 DNA ligase was used to insert the target fragments into the pMIR-reporter plasmid after digestion with restriction enzymes. The correctly sequenced luciferase reporter plasmids NRF2 WT and NRF2-mutant (MUT) were cotransfected into T24 cells with miR-132 mimic. In addition, oe-KLF8, oe-NEDD4 or empty plasmids were cotransfected with the KLF8-mediated CyclinD1 promoter sequence into T24 cells. Cells were harvested 48 h later to extract the proteins. The luciferase detection kit (K801-200, Biovision) of GloMax20/20 Luminometer (Promega, Madison, WI, USA) was employed to assess luciferase activity.
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6

Dual Regulation of XIST and TLR4 by miR-15b-5p

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The binding sites of XIST and miR-15b-5p, miR-15b-5p and TLR4 were predicted by the bioinformatics website StarBase (http://starbase.sysu.edu.cn/index.php). The binding site sequences or their mutants were amplified and inserted into the pmiR vector (Huayueyang, Beijing, China) to construct the wild-type (WT) or mutant (MUT) vectors XIST-WT, TLR4-WT, XIST-MUT, and TLR4-MUT. Subsequently, HEK293T cells (Beinuo, Shanghai, China) were cotransfected with mimic NC or miR-15b-5p mimic for 48 h, after which the cells were collected and lysed, and the luciferase activity was detected using a kit (K801-200; Biovision, Mountain View, CA, United States).
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7

Regulation of HOTAIR and NPTX2 by miR-221-3p

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The wt and mut reporter plasmids of HOTAIR (wt-HOTAIR; mut-HOTAIR) and NPTX2 (wt-NPTX2 and mut-NPTX2) were designed by Shanghai GenePharma Co., Ltd. (Shanghai, China). NC mimic or miR-221-3p mimic was co-transfected with wt-HOTAIR, mut-HOTAIR, wt-NPTX2 or mut-NPTX2 into the MN9D cells. After 24 h, the cells were treated with 100 μmol/L MPP+ (Sigma-Aldrich Chemical Company, St Louis, MO, USA) or PBS for 24 h and then lysed. The luciferase activity of the target reporter gene was analyzed according to the instructions of the luciferase detection kit (K801-200, BioVision, Milpitas, CA, USA).
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8

Dual-Luciferase Assay for miRNA Binding

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IGF2BP2-3′ UTR and lncRNA MALAT1 cDNA fragments with the miR-204 binding site were inserted into the pGL3 plasmids. More specifically, IGF2BP2-3′ UTR-mut and lncRNA MALAT1-mut fragments were constructed by site-directed mutagenesis and subsequently inserted into pGL3 plasmids with the insertion confirmed by sequencing. Lipofectamine 2000 kits were employed to co-transfect recombinant vectors of pGL3-MALAT1, pGL3-MALAT1-mut, pGL3-IGF2BP2-3′ UTR, and pGL3-IGF2BP2-3′ UTR-mut with miR-204 mimic or NC-mimic into HEK293T cells, respectively. Following a 48-h period of transfection, the cells were harvested and lysed. The relative light unit (RLU) was detected using luciferase assay detection kits (K801-200; BioVision, Milpitas, CA, USA) with Renilla luciferase activity serving as the internal reference. Luciferase reporter gene detection was performed using the dual-luciferase reporter gene analysis system (Promega, Madison, WI, USA). The relative luciferase activity was expressed as the ratio of the RLU value of Firefly luciferase to the RLU value of Renilla luciferase.
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9

Luciferase Assay for miR-144 Targeting KLF2

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The KLF2 3′ untranslated region (3′UTR) fragment, containing binding sites to miR‐144, was inserted into the pGL3 plasmid. By using the point mutation method, the KLF2‐3′UTR‐mutant (MUT) fragment containing mutated binding sites was constructed and inserted into the pGL3 plasmid. Through liposome transfection, the correctly sequenced pGL3‐KLF2‐wild‐type (WT) and pGL3‐KLF2‐MUT recombinant vector were cotransfected into HEK293T cells with either miR‐144 mimic or NC mimic. The cells were collected and lysed after being transfected for 48 hours, and the relative light unit of each sample was detected using a luciferase detection kit (K801‐200, Biovision) at dual‐luciferase reporter gene analysis system (Promega). The relative luminescence activity was determined as the ratio of the firefly luciferase relative light unit (RLU) to the Renilla luciferase RLU (internal reference).
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10

Bioinformatic Analysis of miR-20b-5p Binding

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Bioinformatics analysis provides a binding potential of miR‐20b‐5p and ZNF532 or STAT3 using Starbase (http://starbase.sysu.edu.cn/). The sequence of ZNF532 or STAT3 3′UTR containing the wild‐type (WT) miR‐20b‐5p binding site was inserted into the pmirGLO luciferase reporter vector (Promega, USA). The mutant‐type reporter ZNF532‐MUT or STAT3‐MUT was also constructed. The ARPE‐19 cells were co‐transfected with ZNF532‐WT or ZNF532‐MUT concurrent with miR‐20b‐5p mimic or NC. STAT3‐WT and STAT3‐MUT were also prepared and delivered into ARPE‐19 cells with miR‐20b‐5p mimic or NC. After 48 h, the luminescence of firefly luciferase in ARPE‐19 cells was determined using a dual‐luciferase reporter assay system kit (K801‐200, BioVision, USA), and Glomax20/20 luminometer (Promega).
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