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4 protocols using ssea 1

1

Immunofluorescence Staining of Avian PGCs

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Circulating PGCs derived from HH14 embryonic blood or cultured PGCs were adhered onto a MAS-GP Type A coated
glass slide (Matsunami Glass, Osaka, Japan) and fixed with 4% paraformaldehyde for 5 min at room temperature
(RT). After several washes, cells were blocked with PBS containing 5% normal goat serum or Image-iT signal
enhancer (Life Technologies) and incubated overnight at 4ºC with primary antibodies. Then, cells were
incubated for 30 min or 1 h at RT with secondary antibodies. Subsequently, cells were counterstained with 1
µg/ml Hoechst 33342 (Dojindo, Kumamoto, Japan). Fluorescent images were captured using an Eclipse E1000
fluorescence upright microscope (Nikon, Tokyo, Japan), and these images were processed using Photoshop
Elements (Adobe Systems, San Jose, CA, USA) for trimming and overlaying. Sources and dilution of used
antibodies were as follows: rat anti-chicken vasa homolog (CVH) raised in our laboratory (1:10000) [27 (link)], mouse anti-stage specific embryonic antigen-1 (SSEA-1; 1:100,
Developmental Studies Hybridoma Bank, Iowa City, IA, USA), mouse anti-chicken c-KIT (1:500, SouthernBiotech,
Birmingham, AL, USA), goat anti-rat IgG conjugated with Alexa Fluor 488 (1:1000, Life Technologies) and goat
anti-mouse IgG or IgM conjugated with Alexa Fluor 594 (1:1000, Life Technologies).
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2

Immunophenotyping of Pluripotent Stem Cells

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AP staining was performed according to the manufacturer's (Sidansai, China) instructions. For the immunofluorescence staining, cells were fixed with 4% formaldehyde in DPBS for 15 min, permeabilized with 1% Triton X-100 in DPBS for 15 min, and blocked with 2% bovine serum albumin in DPBS for 1 h. Thereafter, cells were incubated with primary antibodies for 1 h, including those antibodies Oct4 (1∶200, Abcam), Sox2 (1∶200, Cell Signaling), Nanog (1∶200, Abcam), TRA-1-60 (Millipore, 1∶200), TRA-1-81 (Millipore, 1∶200), SSEA1 (1∶50, Developmental Studies Hybridoma Bank), SSEA3 (1∶50, Developmental Studies Hybridoma Bank), SSEA4 (1∶50, Developmental Studies Hybridoma Bank), 5-methyl cytidine (5-mC, 1∶200, Abcam), 5-hydroxymethyl cytidine (5-hmC, 1∶200, Active Motif), H3K27me3 (1∶250, Millipore). Primary antibodies were detected using secondary antibodies conjugated to Alexa Fluor 488 (1∶500, Molecular Probes) and Alexa Fluor 594 (1∶500, Molecular Probes).
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3

Immunohistochemical Analysis of Embryonic Markers

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Embryos fixed in 4% PFA were embedded in OCT and cryosectioned at a thickness of 10 µm. Slides were blocked 1 h in 10% calf serum + 0.1% Triton X-100 in PBS and stained overnight at 4°C in the blocking buffer followed by three 15-min washes in PBS. Primary antibodies used included β-catenin (rabbit, 1:25; #9582s; Cell Signaling Technology), Axin2 (goat, Conductin M-20, 1:100; #sc-8570; Santa Cruz Biotechnology, Inc.), GFP (chicken, Aves GFP-1020, 1:200), SSEA1 (mouse IgM, 1:200; MC-480; Developmental Studies Hybridoma Bank), Vasa (rabbit, 1:400; #ab13840-100; Abcam), cleaved PARP (rabbit, 1:50; #9544s; Cell Signaling Technology), E-cadherin (rat, 1:200; #13–1900; Invitrogen), Wnt5a (goat, 1:20; #AF645; R&D Systems), and Stella (rabbit, 1:100; #ab19878; Abcam). Histological staining for β-catenin was preceded by 10 min additional fixation in 4% PFA and 3 min treatment in undiluted Ficin (Invitrogen) at room temperature followed by a quick PBS wash. This treatment was not necessary for β-catenin staining on cultured cells. EdU was labeled per kit protocol (#C10338 or C10340; Thermo Fisher Scientific). Secondary antibodies were purchased from Invitrogen and incubated for 1 h in blocking buffer at room temperature at 1:200. Nuclei were labeled with DAPI or Hoechst (1:1,000; Roche or Sigma-Aldrich). Sections were mounted in Vectashield (Vector Laboratories).
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4

Immunofluorescence Characterization of siPSCs

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The siPSCs were identified after typical colony formation. The differentiation ability of EB was measured on the 7th day in a 24-well cell culture plate. Cells were fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.2% Triton X-100 for 10 min, and then blocked with 2% BSA for 30 min at room temperature. The primary antibodies against Sox2 (1:200, Abcam), Oct-3/4 (1:100, Santa Cruz), Nanog (1:100, Santa Cruz), Rex-1 (1:100, Santa Cruz), SSEA-1 (1:20, Developmental Studies Hybridoma Bank), E-cadherin (1:100, BD), Tra-1-60 (1:200, Millipore), Tra-1-81 (1:200, Millipore), smooth muscle actin (SMA, 1:200, Santa Cruz), β-tubulin (Tuj-1, 1:100, Santa Cruz), and human Sox17 (Sox17, 1:100, R&D) were added and incubated overnight at 4℃. Cy3-labeled anti-mouse IgG (1:500, Beyotime, China) and anti-mouse IgM (1:500, Bioss, China) secondary antibodies were added for 1 h at 37℃ for detection of target proteins. Nuclei were stained with DAPI (1:1,000, Sigma) for 5 min.
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