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10 protocols using anti rac1 antibody

1

Rac1 Activation Assay in Human CECs

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Human CECs were cultured in EGM-2 containing 5% FBS. Prior to starting the assay, cells were serum starved with basal medium EBM2 (Lonza) overnight. Cells were then stimulated with VEGF (20 ng/mL) or 7-keto-cholesterol (7-KC) (5 or 12.5 μM) for 30 minutes after pretreatment with Thy-1 blocking peptide (250 ng/mL) or PBS vehicle control for 30 minutes. Equal amounts of lysates (500 μg) were incubated with (glutathione S-transferase -p21-activated kinase 1 p21 binding domain agarose beads (Millipore, Temecula, CA, USA) to pull-down active guanosine triphosphate (GTP)–bound Rac1 at 4°C for 30 minutes, with rotation. The samples were subsequently analyzed for GTP-bound Rac1 by Western blot analysis using an anti–Rac-1 antibody (BD Transduction Laboratories, San Jose, CA, USA). Rac1 activity was determined by GTP-Rac1 normalized to total Rac1 in the cell lysate.
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2

Antibody Characterization for Chimaerin and Rac1 Signaling

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The following antibodies were used: primary antibodies for α1-chimaerin and α2-chimaerin were raised in rabbits immunized with keyhole limpet hemocyanin-coupled synthetic peptides as previously reported39 (link). Keyhole limpet hemocyanin-coupled synthetic peptides for α1-chimaerin was MPSKESWSGRKANR and keyhole limpet hemocyanin-coupled synthetic peptides for α2-chimaerin was HDEKEATGQDGVSEKR. Anti-Rac1-GTP (active Rac1) monoclonal antibody was from the NewEast company (Cat. No. 26903). Anti-Rac1 antibody was from BD Transduction Laboratories (Cat. No. 610650). Anti-phospho-PAK1/2/3 antibody was from novusbio company (Cat. No. NB100-82131). Anti-Cleaved Caspase-3 antibody was from Cell Signaling (Cat. No. 9661). Horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (Cat. No. #7072) and HRP-conjugated goat anti-rabbit IgG (Cat. No. #7071) were from Cell Signaling Technology. Alexa Fluro® 488 affinipure donkey anti-mouse IgM was from the Jackson ImmunoResearch Laboratories company (Cat. No. #711-545-140). Actin antibody was from the Merck Millipore company (Cat. No. #MAB1501).
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3

Prostate Cancer Cell Line Cultivation and Protein Analysis

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Prostate cancer cell lines (LNCaP, DU145 and PC3) were obtained from American Type Culture Collection (ATCC) (Rockville, MD). They were maintained and cultured, as previously described.4 (link),20 (link),21 (link) Recombinant human Epidermal Growth Factor (EGF) was purchased from R&D systems (Minneapolis, MN). The antibodies anti-His-tag, anti-p-mTOR (Ser-2448), anti-p-mTOR (Ser-2481), and anti-mTOR were purchased from Cell Signaling Technology (Danvers, MA). Anti-Rac1 antibody was purchased from BD Biosciences (New Jersey, NY). Protein A/G agarose beads, RAPTOR, RICTOR, and Rac1 siRNA oligos were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-α-Tubulin antibody was purchased from Sigma–Aldrich (St Louis, MO). The anti-rabbit and anti-mouse immunoglobulins coupled with horseradish peroxidase (IgG-HRP) were obtained from Promega (Madison, WI). Rac1 inhibitor (NSC23677) was obtained from Tocris Biosciences (Bristol, UK). Rapamycin was obtained from CalBioChem (San Diego, CA). Fluorescent stains for cell nuclei: DAPI (4’, 6-diamidino-2-phenylindole) and for actin: Rhodamine-Phallodin were purchased from Roche Diagnostics (Indianapolis, IN) and Cytoskeleton Inc. (Denver, MO), respectively.
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4

Evaluating Rac1 Activity in aSMC and Lung

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In human or murine aSMC lysates, Rac1 activity was evaluated by active Rac immunoprecipitation using anti-Rac-GTP antibody (26903, NewEast Biosciences, King of Prussia, Pa). The precipitated active Rac was subjected to SDS-PAGE and detected by immunoblot with anti-Rac1 antibody (BD Biosciences). In pulmonary paraffin-embedded sections, Rac-GTP levels were detected by immunofluorescence. Sections were deparaffinized and permeabilized (PBS 1 0.1% Triton-X100) before incubation with anti-Rac-GTP antibody (1/500) overnight at 48C. After 3 washes in PBS, sections were incubated for 1 hour at room temperature with the secondary Alexa568labeled anti-mouse antibody (1/1000).
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5

Isolation and Analysis of Intestinal Epithelial Cells

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Intestinal epithelium from villi and crypts were isolated as previously described (Melendez et al., 2013 (link)). Tissues were homogenized in lysis buffer containing protease and phosphatase inhibitors, sonicated at 4°C, mixed with 4× SDS loading buffer, and heated at 100°C for 5 min. A Bradford assay was used to determine protein concentration (Bio-Rad). Antibodies for western blotting are: anti-RHOA (#2117), Cdc42 (#2462), MLC2 (#3671), p-MLC2 (#3675), Bcl-2 (#15071), BCL-xL (#2764), p53 (#2527), p-p53 (#2521), cleaved caspase-3 (#9661), YAP (#14074), and GAPDH (#5174) (all from Cell Signaling), and anti-Rac1 antibody (#610650, BD Biosciences). The FOCUS SubCell kit (G Biosciences) was used to separate crypt cell cytosolic and nuclear fractions.
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6

GST Protein Purification and Pull-Down Assay

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GST and GST-SH3 proteins were expressed in Escherichia coli BL21 and purified using Glutathione Sepharose 4B (#17-0756-01; GE Healthcare, Buffalo Grove, IL, USA), as described previously [27 (link), 28 (link)]. HEK293T cells were washed with ice-cold phosphate-buffered saline (PBS) and lysed with pull-down buffer (50 mM Tris-Cl, pH 7.4, 100 mM NaCl, 0.5 % Triton X-100, 5 % glycerol, 5 mM MgCl2, 1 mM DTT, 20 mM NaF, 1 mM aprotinin, 1 mM leupeptin, and 1 mM pepstatin). After centrifugation at 21,000 × g for 15 min at 4 °C, the supernatant was incubated with 5 µg GST or GST-SH3 protein in pull-down buffer for 1 h at 4 °C and combined with 20 µl Glutathione Sepharose 4B. After incubation, the beads were washed three times with pull-down buffer, after which Western blotting was performed. For the GST-PBD pull-down assay, GST-PBD purified protein, a p21-binding domain of PAK1, was employed. HEK293T cells transfected with the indicated vectors were lysed with pull-down buffer and incubated with 5 µg GST-PBD protein for 1 h at 4 °C, followed by incubation with 20 µl Glutathione Sepharose 4B. Active Rac1 was pulled down and visualized using Western blotting with an anti-Rac1 antibody (#610651; BD Transduction Laboratory).
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7

Rac1 Activation Assay Protocol

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PAK-PBD beads were purchased from Cytoskeleton Inc. Cells were lysed using Rac1 IP buffer (50 mM Tris-HCl [pH 7.5], 10 mM MgCl2, 0.5 M NaCl, and 2% Nonidet P-40), and the protein concentration was adjusted to 0.5 mg/ml. For the pull-down assay, 800 μl of cell lysate was used for each time point, and 10 μl of PAK-PBD beads was added to each lysate. Bound GTP-Rac1 was detected by Western blotting using an anti-Rac1 antibody (BD Biosciences).
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8

Immunofluorescence Analysis of Wing Disc

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Third instar wing discs were staged and fixed in 4% paraformaldehyde. Immuno-fluorescence was performed as described(Das et al., 2013 (link)). Antibodies used: anti-pRET[Y905], anti-pJnk, anti-pAkt, anti-SOX2, anti-slug, anti-NCadherin, anti-pEGFR[Y845], anti-pEGFR[Y1068], anti-pFGFR[Y653/654], anti-Rab5, anti-Rab7, anti-Rab9(Cell Signaling), anti-pSRC[Y418] (Invitrogen), anti-dpERK (SIGMA), plus anti-Actin,, anti-E-cadherin, anti-α-Catenin, anti-Rho1, anti-Syntaxin, anti-β-tubulin (Developmental Studies Hybridoma Bank), anti-Actin, anti-GAPDH antibodies (Santa Cruz Biotechnology), anti-Rac1 antibody (BD biosciences), anti-KIF5B(Abcam), anti-EGFR (Julia Cordero), anti-Arp3(William Theurkauf).
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9

Protein Extraction and Western Blotting

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Protein extraction and western blotting were carried out using standard protocols54 (link),55 (link). β-Actin detection using a rabbit mAb (Cat# 8457 (D7A8); Cell Signaling), GRB2 (Cat# 610111; BD Transduction Laboratories), GAPDH (Cat# 2118; Cell Signaling), or Akt (Cat# 4691; Cell Signaling) were used as loading control. Hemagglutinin (HA) epitope tag monoclonal antibody (anti-HA antibody, Cat# MMS-101P-1000 (1.0 ml), Covance (Cedarlane)) recognizing an HA-epitope tagged HACE1 protein and anti-HACE1 antibody (Cat# ab133637; Abcam), that detect different HACE1 fragments, were used at 1:1000 dilution. Western blotting for total RAC1 was conducted using an anti-RAC1 antibody (Cat# 610650; BD Biosciences), and RAC1/2/3 was assessed using an anti-pan-Rac antibody (Cat# 2465; Cell Signaling). All antibodies were used at a dilution of 1:1000 unless otherwise stated.
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10

GTP-RAC1 Activation Assay

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The GTP-RAC1 assay was performed as previously described [18 (link)] using a GST fusion protein of the CRIB domain of PAK1 (GST-PAK-CRIB) as bait to enrich activated GTP-bound RAC1. RAC1 was detected by immunoblotting with a monoclonal anti-RAC1 antibody (BD Transduction lab, CA).
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