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17 protocols using mki67

1

Immunohistochemistry of FFPE Tissue Samples

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For immunohistochemistry, 5μm sections of formalin-fixed paraffin-embedded (FFPE) tissues were dewaxed with xylene and rehydrated. Antigen retrieval was achieved by microwaving in unmasking solution (Vector Laboratories). After washing, sections were blocked in 5% FCS and immunoperoxidase analysis was performed on tumors for MKI67 (Abcam). The slides were counterstained lightly with hematoxylin for viewing negatively stained cells. H&E slides were used to assess the morphological integrity and geographical variation in morphology of the tissue samples. The slides were analyzed under the LEICA DC500 microscope. Three 40× high-power fields were analyzed for each slide.
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2

Immunohistochemical Analysis of Cell Signaling

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Paraffin‐embedded tissues were sliced into 4–5 μm sections using a microtome, samples were dewaxed and hydrated with xylene and alcohol rinsed with PBS, and subjected to high‐pressure antigen recovery with citrate buffer in a microwave oven (100°C for 4×7 min, when finished, cool the sample to room temperature). The tissue samples were incubated with 3% H2O2 for about 10 min followed by blocking with 3% FBS for 30–60 min. The tissue was incubated with the corresponding antibody at 4°C for at least 12 h. For IHC staining, antibodies specific for Cyclin D1 (Cell Signaling Technology, 2968), MKI67 (Abcam, ab16667), GSK3β (Cell Signaling Technology, 12456T), β‐catenin (Cell Signaling Technology, 8480P) and YTHDF2 (Proteintech, 24744‐1‐AP) were used.
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3

Multimodal Characterization of Embryonic Development

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Frozen human cancer tissues or fixed mouse deciduas from timed breeding were cut at 5 μm and immunostaining was performed according to standard procedures using antibodies against human SLC7A11 (no. 12691, Cell Signaling Technology), mouse p53 (CM5, Leica), BrdU (Ab6326, Abcam), Mki67 (Ab15580, Abcam) and cleaved caspase3 (9664, Cell Signaling). TUNEL assay was carried out using DeadEnd TUNEL system according to the manufacturer's instructions (Promega). Intraperitoneal injection of BrdU (BD Pharmagen) was given to pregnant mice at day E7.5 at 100 μg BrdU per g body weight. After 2 h, the embryos were collected and fixed in 10% formalin at 4 °C overnight. The embryos were embedded in paraffin and serial sections were collected for BrdU staining. Transmission electron microscopy was performed using standard procedures by the Microscopy Core at NYU. At least 20 images were acquired for each structure of interest and representative images are shown.
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4

Immunohistochemical Analysis of MKI67 in Implantation Sites

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Sections (5–6 μm) of paraffin-embedded implantation sites were cut with a microtome. Immunohistochemistry was performed using the Vectastain Elite ABC-HRP Kit (Vector Laboratories), with minor modifications. Uterine sections were deparaffinized and rehydrated. Antigen retrieval was performed in boiling sodium citrate buffer and endogenous peroxidase activity was blocked using hydrogen peroxide, as described.13 (link) Slides were incubated with primary antibody against MKI67 (Abcam, dilution 1:500) at 4°C overnight. The chromogen substrate 3, 3′-diaminobenzidine (DAB; Vector Laboratories, Burlingame, CA) was used to detect positively stained cells. Slides were counterstained using Gill hematoxylin (Sigma-Aldrich) for 15 s and mounted with Permount (Fisher Scientific). Images were captured using an Olympus BH-2 microscope under bright field illumination with a 25X lens.
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5

Histological Analysis of Skeletal Development

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The femurs and cranial base from Osx-cre, Osx-Fgfr3 and Col1-Fgfr3 mice and their control littermates were fixed in 4% paraformaldehyde at 4°C for 24 h, washed in PBS, decalcified in 0.5 M EDTA (pH 8.0) for a week or a month (depending on mouse age), dehydrated in graded ethanol solutions, cleared in xylene and embedded in paraffin. Five-micrometer sections were cut, stained with Safranin O and immunohistochemically stained using standard protocols. Antibodies against collagen type X (1:50; BIOCYC, Luckenwalde, Germany), pERK1/2 (1:500; Cell Signaling Technology, USA) and Ki67 (also known as Mki67; 1:3000; Abcam, Cambridge, MA, USA) and the Dako Envision kit (Dako North America, CA, USA) were used. Images were acquired with a PD70-IX2-UCB microscope (Olympus, Tokyo, Japan) and analyzed using ImageJ software (National Institutes of Health, Bethesda, MD, USA). Mean areas of individual HCs and number of HCs were measured from collagen X-labeled sections, within multiple 8500 µm2 regions of interest on sections immunostained for collagen type X.
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6

Nanoparticle Formulation Development

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FA and ASP were purchased from Sigma-Aldrich (St. Louis, MO, USA). Stearic acid, Poloxamer 188, chitosan and lecithin was obtained from Spectrum Chemicals (Gardena, CA, USA). Dichloromethane (DCM) was obtained from Fisher Scientific (Houston, TX, USA). Sodium chloride was purchased from ChemCruz (Santa Cruz, CA, USA). Hydrochloric acid was purchased from Ricca Chemicals (Arlington, TX, USA). The primary antibodies against PCNA, p-ERK1/2 (Thr202/Tyr204), and p-RB were obtained from Cell Signaling Technologies (Danvers, MA, USA). The MKI67 and p21 primary antibodies were purchased from Abcam (Cambridge, MA, USA).
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7

Histopathological and Immunological Analysis of Skin Tissues

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Human and mice skin tissues were fixed with 4% paraformaldehyde in PBS, embedded in paraffin, sectioned, and stained with H&E for histopathologic examination. Immunohistochemistry was performed on formalin-fixed, paraffin-embedded skin tissues. The slices were probed overnight with SerpinB7 (Sigma-Aldrich, HPA024200), mKi67 (Abcam, ab16667). For Immunofluorescence, skin frozen sections were cryosectioned, blocked, and then stained with anti-Filaggrin (Biolegend, 905804), anti-KRT10 (Abcam, ab76318), anti-Loricrin (Biolegend, 905101). Images were captured using an Olympus BX600 microscope (Olympus Corporation, Tokyo, Japan) and SPOT Flex camera (Olympus Corporation, Tokyo, Japan) and were analyzed with ImagePro Plus (version 6.0, Media Cybernetics) software. The epithelial thickness and infiltrating cells were calculated in independent regions as described previously [47 (link)].
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8

Immunocytochemistry of Passage 5 PMSCs

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PMSCs at passage 5 were fixed in 4% paraformaldehyde in PBS for 10 min and permeabilized with 0.5% Triton X-100 in PBS for 5 min at room temperature. After 120 min blocking with 3% BSA (SIGMA), cells were incubated with primary antibody overnight at 4°C. The next day, cells were washed and stained with secondary antibodies (1:300, goat antirabbit IgG-Cy3; or 1:300, goat antimouse IgG-FITC) for 60 min at room temperature and then washed three times with phosphate-buffered saline (PBS). The primary antibodies for respective cells include PRDM1 (1:100, Abcam), CXCL8 (1:300, SANTA CRUZ), TOP2A (1:200, Abcam), MKI67 (1:100, Abcam), DEDD2 (1:100, Abcam), THY1 (1:100, Abcam), CITED2 (1:100, Abcam), and IGFBP6 (1:100, Abcam). Cell nuclei were counterstained with DAPI (4′,6-diamidino-2-phenylindole) (1:500). The images were captured using Olympus IX73 and further analyzed with ImageJ software.
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9

Multiplex Immunofluorescence of Epidermal Markers

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Cultured cells or tissue were fixed in 4% paraformaldehyde for 11 min followed by blocking in PBS with 2.5% normal goat serum, 0.3% triton X-100, and 2% bovine serum albumin for 30 min Primary antibodies used were Keratin 1 (Biolegend: PRB-149P) at 1:1000, Filaggrin (Abcam: ab3137) at 1:200, MKi67 (Abcam: ab16667) at 1:300, Keratin 10 (Abcam: ab9025) at 1:500, HNRNPK (Bethyl Laboratories: A300–674A) at 1:1000 for 1 h. The secondary antibodies used were Alexa 555 conjugated goat anti-mouse IgG (ThermoFisher: A11029) or Alexa 488 conjugated donkey anti-rabbit IgG (ThermoFisher: A21206) both at 1:500. Nuclear dye, Hoechst 33342 was used at 1:1000 (ThermoFisher: H3570).
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10

Immunohistochemical Profiling of Molecular Markers

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Formalin‐fixed, paraffin‐embedded (FFPE) tissue sections were deparaffinized and rehydrated by using xylene and ethanol, respectively. After retrieval with citrate buffer at pH 6.0, the endogenous peroxidase activity of specimens was quenched by peroxidase‐blocking solution (Dako). The sections were incubated with the primary antibody against the target protein as indicated below: MYC (Abcam, ab32072), CEBPD (Abcam, ab184911), HK2 (Cell Signaling, 2867), FBXW7 (Abcam, ab105752), phospho‐AKT (Cell Signaling, 4060), phospho‐mTOR (Abcam, ab51044), phospho‐4E‐BP1 (Cell Signaling, 9644), phospho‐RPS6 (Abcam, ab80158), and MKI67 (Abcam, ab66155), followed by the incubation of a secondary antibody (REAL EnVision/HRP, rabbit/mouse [ENV], Dako). Staining was visualized with EAL DAB+ Chromogen diluted in REAL Substrate Buffer (Dako). Hematoxylin was used for the nuclear stain. Finally, the slices were dehydrated by soaking in various concentrations of ethanol and were mounted in UltraCruz Aqueous Mounting Medium with DAPI. The IHC staining results were examined with an optical microscope and quantified into H‐scores by three expert pathologists (Chien‐Feng Li, Tzu‐Ju Chen and Wan‐Shan Li ) as previously mentioned.22 Detailed information is shown in Supporting Information.
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