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11 protocols using hoechst 33258

1

FACS-based Identification of CD44+/CD24+ Cells

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FACs was performed as previously described21 (link) with cells stained with anti-CD44-APC (559942), anti-CD24-PE (555428), and Hoechst 33258 (BD Biosciences). The one-sided t-test was used to determine significance against control siRNA.
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2

High-Content Confocal Imaging Assay

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High-content confocal imaging was performed in 96-well clear bottom imaging tissue culture plates (BD Biosciences) optimized for automated imaging applications. Triton® X-100 permeabilization and blocking, primary antibody staining, secondary antibody staining using Alexa Fluor® 488 goat anti-rabbit/mouse IgG (Invitrogen, Molecular Probes, Eugene, OR) and counterstaining (Hoechst 33258; Invitrogen) were performed following BD Biosciences protocols. Images were captured in different channels for Alexa Fluor® 488 (pseudocolored green) and Hoechst 33258 (pseudocolored blue) on a BD PathwayTM 855 Bioimager System (BD Biosciences) with 20× or 40× objectives (NA 075, Olympus). Merged images were obtained according to the Recommended Assay Procedure using BD AttovisionTM software.
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3

TCam-2 Nucleus Localization Assay

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TCam-2 cell nucleus localization and morphology was observed 72 h post-transfection, followed by 1 h incubation in culture medium supplemented with 1 ug/ml Hoechst 33258 (BD, USA). Cells were washed with 1× PBS (Lonza), and then visualized using a Leica DMi8 IVD microscope under UV (for Hoechst 33258 detection) and visible light.
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4

Cellular Uptake Kinetics of Cell Debris and Fibronectin Fragments

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After 1 day in culture, DiO-labeled cell debris (100 μl) and FITC-labeled Fn-fs (10 μg) were added to each dish (35 mm). The cells were then cultured for various time periods (3 hrs, 6 hrs, 12 hrs, and 24 hrs). For microscopy analysis, cells were washed with Hanks’ Balanced Salt Solution and stained with 1 μM Calcein Red-Orange (Invitrogen, Grand Island, NY) for 30 mins. For flow cytometry analysis, cells were trypsinized after washing in Hanks solution, and then suspended in 1 ml culture media in 5 ml Falcon Polystyrene Tubes (BD Bioscience, San Jose, CA). Hoechst 33258 (BD Biosciences, San Jose, CA) was added to each sample to a concentration of 4 μg/ml to label dead cells.
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5

Apoptosis Assay for MC3T3-E1 Cells

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Cell apoptosis assay was assessed by using PE Annexin V Apoptosis Detection Kit I (BD Biosciences, San Diego, CA, USA) and Hoechst 33258 staining as previously described [18]. Briefly, following different treatments, MC3T3-E1 cells were collected and resuspended in 100 μL binding buffer, stained with Annexin V-PE and 7-AAD at room temperature in the dark for 15 min. Stained cells were analysed using a FACSCantoⅡ flow cytometer (BD Biosciences, USA). For pathway blocking experiments, cells were pre-incubated with PD98059 (10 μM) for 2 h, then cells were treated with EPC-MVs or EPC-MVs-miR126. Cell apoptosis rate was quantified in three times independent experiments.
For Hoechst 33258 staining, cells were washed with PBS and fixed with 4% paraformaldehyde for 10 min after EPC-MVs or EPC-MVs-miR126 treatment for 48 h, then stained with Hoechst 33258 (Sigma, Louis, MO, USA) according to the manufacturer’s instruction. Morphologic changes were observed under a fluorescence microscopy in four independent fields.
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6

Apoptosis Assay in SW-13 and NCI-H295R Cells

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The SW-13 and NCI-H295R cells were cultured with different concentrations of TG or JNK inhibitor SP600125 (AbMole, USA) for 48 h, followed by harvesting and suspending in 1× Binding Buffer; the cells were incubated with 5 µL Annexin V-FITC and 5 µL PI (BD Biosciences, USA). The apoptotic SW-13 and NCI-H295R cells were analyzed by BD FACS Verse (BD Biosciences, USA).
The apoptotic cells were also analyzed by Hoechst 33,258 staining. Briefly, 48 h after incubation, the SW-13 and NCI-H295R cells were immobilized with 70% ethanol for 20 min; then, the 70% ethanol was removed, and Hoechst 33,258 (Beyotime, China, 500 µL/well) was added for 10 min. The pictures were captured under a fluorescence microscope (Nikon Corporation, Japan).
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7

Quantitative Analysis of Cell Apoptosis

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Cell apoptosis was first analyzed using a fluorescein isothiocyanate (FITC)-Annexin V apoptosis kit (BD Biosciences, San Jose, CA, USA). In brief, the C6661 and 6-10B cells were resuspended in 1 × Annexin V binding buffer supplemented with 10 mM HEPES/NaOH (pH = 7.4) (1 × 106 cells/mL). The cells were cultured with FITC-Annexin V (5 µL) and propidium iodide (5 µL) at 37 °C for 20 minutes and analyzed using a flow cytometer (BD Biosciences).
Apoptosis of cells was further examined using Hoechst 33,258 staining. In short, the cells were seeded in 6-well plates and cultured in medium at 37 °C for 24 hours. Then, the cells were trypsinized and centrifuged at 1000 rpm for 5 minutes. After PBS washes, the cells were stained with 300 µL Hoechst 33,258 (C1017, Beyotime) at room temperature for 5 minutes and then observed under the fluorescence microscope at a wavelength of 365 nm. Three random fields were observed at a × 20 magnification for cell apoptosis detection.
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8

Comprehensive Flow Cytometry Immunophenotyping

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The efficacy of particular cell depletion from the spleens of individual mice was verified by flow cytometry using monoclonal antibodies NK1.1-APC (clone PK136), CD3-BD-Horizon V450, CD4-PerCP, CD8-APC-eFluor780, NKp46-FITC (BD Biosciences, San Jose, CA, USA or eBioscience, San Diego, CA, USA). Samples were measured in a BD LSRII flow cytometer (BD Biosciences, Franklin Lakes, NJ, USA) in a four-laser set-up (405, 488, 561 and 633 nm) and data were offline-compensated and evaluated based on single-stain controls in FlowJo version 9 (Tree Star, Ashland, OR, USA). Doublet exclusion and morphology was based on forward-scatter (FSC), FSC height and side-scatter (SSC) area; propidium iodide (PI) or Hoechst33258 (BD Biosciences) was used for exclusion of non-viable cells.
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9

Purification Efficiency of MACS-Sorted CECs

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To determine the purification efficiency of MACsorted CECs, flow cytometry of cell isolations was performed directly after MACS. Therefore about 1x106 cells from (1) single cell suspensions directly after enzymatic digestion without MACS (pre-sort fraction), (2) single cell suspension after MACS from flow through (post-sort negative-fraction) and (3) single cell suspension after MACS adherent to the MACS column (post-sort positive-fraction) were taken, centrifuged at 300 g for 10 min at 4°C and resuspended in ice cold fluorescence-activated cell sorting-(FACS)-buffer consisting of 2 mM EDTA and 1 % FCS in PBS. To prevent unspecific binding of antibodies, all samples were incubated with mouse Fc block (BD Bioscience) for 5 min. Afterwards all samples were labeled with anti-CD31-PE antibody (1:1000, BD Bioscience) for 30 min at 8°C. To exclude dead cells from analysis, the samples were incubated with 1 μg ml-1 Hoechst-33258 (BD Pharmingen) shortly before flow cytometry analysis. Isotype controls were generated to exclude unspecific binding. Finally, all samples were analyzed using a CyFlow cytometer (Partec, Goerlitz, Germany) in combination with FlowJo software (Tree Star Inc., Ashland, USA). For embryonic CEC injections into hearts with cryoinfarctions, only preparations with > 85 % purity of CECs were used.
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10

Flow Cytometric Identification of CSCs

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Flow cytometry and CSC gating were performed as previously described [28 ]. Briefly, cells were stained with anti-CD44-APC (559942; BD Biosciences, Franklin Lakes, NJ), anti-CD24-PE (555428; BD Biosciences), anti-EpCAM-PerCP-Cy5.5 (347199; BD Biosciences) antibodies, Hoechst 33258 (BD Biosciences), propidium iodide (PI; 556463; BD Biosciences), and Annexin V (Biolegend, San Diego, California; 640918). Flow cytometric analysis was performed on single cell suspensions for the CD44hi/CD24lo/EpCAM+ CSC phenotype.
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