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6 protocols using tofacitinib

1

Interferon Stimulation Assay

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Murine IFN-α, IFN-β, IFN-γ, IFN-λ2, and IFN-λ3, as well as human IFN-α and IFN-β were purchased from R&D Systems. For IFN-I treatment, cells were given 10 units/mL of IFN-α and IFN-β unless otherwise noted. Cells were treated with 10 ng/mL of IFN-II (IFN-γ) or IFN-III (IFN-λ2 and IFN-λ3). For JAK inhibition, cells were treated with 50 nM tofacitinib (Cayman Chemical) at the time of stimulation.
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2

Isolation and Stimulation of Peripheral Macrophages

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Peripheral circulating macrophages were isolated from splenic tissue. Single-cell suspensions were incubated with fluorescein isothiocyanate–labeled anti-CD3, anti-CD19, anti-NK1.1, and anti-Ly6G (BioLegend) followed by EasySep Mouse Streptavidin RapidSpheres (Stem Cell Technologies; 19860). Flow-through was then incubated with EasySep Mouse CD11b Positive Selection Kit (Stem Cell Technologies; 18970) to isolate the nonneutrophil, non–natural killer cells, nonlymphocyte, CD11b+ cells. When indicated, peripheral macrophages were stimulated with/without IFNβ (PBL Assay Science; catalog no. 12400–01; 100 U/ml). For JAK1 and JAK3 inhibition, cells were treated with 50 nM tofacitinib (Cayman Chemicals) at the time of stimulation with IFNβ. Cells were saved in Trizol (Invitrogen) for quantitative RT-PCR analyses or processed for chromatin immunoprecipitation as described below.
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3

Modulating Intestinal HDAC1/2 Deletion

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Hdac1 and Hdac2 floxed mice [21 (link)] were crossed either with villin-Cre transgenic mice [22 (link)] to ensure IEC-specific Hdac1 and Hdac2 deletion, or with villin-CreER transgenic mice [23 (link)], to obtain Tamoxifen-inducible IEC-specific Hdac1 and Hdac2 deletion, in a C57BL/6J X 129SV X CD1 background. Experiments were approved by the Institutional Animal Review Committee of the Université de Sherbrooke (protocol 360-14B), according to relevant guidelines and regulations. Genotypes were determined by using selected primers to amplify genomic DNA purified with the Spin Doctor genomic DNA kit (Gerard Biotech, Oxford, OH, USA), as before [18 (link),24 (link),25 (link)]. Three- to four-month-old wild-type and IEC-specific villin-Cre Hdac1−/−; Hdac2−/− mice were injected intraperitoneally with 30 mg/kg of the pan-JAK inhibitor Tofacitinib (Cayman Chemical Company, Ann Arbor, MI, USA) [26 (link)], or with 10 mg/kg of the Notch inhibitor DBZ or Dimethyl Sulfoxide (DMSO), for five days (n = 3 for each group). To assess proliferation, mice were injected intraperitoneally with 10 mL/kg of bromodeoxyuridine (BrdU, Life Technologies, Grand Island, NY, USA) on day 6, for 2 h. Mice were killed on the sixth day.
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4

IFNβ Stimulation and JAK1,3 Inhibition

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When indicated, BMDMs were stimulated with/without IFNβ (10 U/mL) (PBL Assay Science, catalog no. 12400-01). Likewise, for JAK1,3 inhibition, cells were treated with 50 nM tofacitinib (Cayman Chemicals) at the time of stimulation with IFNβ. Agents were added directly to the infection media at time of infection and removed with the inoculum after 4 h.
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5

Antiretroviral Drug Effects on hiPSC-Neurons

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hiPSC-neuron cultures were treated with ARVs or ARV combinations for 1 or 7 days prior to assays. The following ARVs were used alone or in combination in this study: dolutegravir (DTG; Toronto Research Chemicals #D528800; Toronto, ON, Canada), elvitegravir (EVG; Toronto Research Chemicals #E509000), tenofovir disoproxil fumarate (TDF; Toronto Research Chemicals #T018505), emtricitabine (FTC; Toronto Research Chemicals #E525000), DTG+TDF+FTC, EVG+TDF+FTC, and TDF+FTC. Vehicle (0.2% DMSO) and antagonist control treatments (25 μM para-nitroblebbistatin; Optopharma Ltd. #DR-N-111; Budapest, Hungary) were also applied to the cells. hNPCs were treated with 0.2% DMSO, ARVs, SAHA (Cayman Chemical #10009929; Ann Arbor, MI, USA), GSK343 (Cayman Chemical #14094), tofacitinib (TOF, Cayman Chemical #11598), or (+)-JQ1 (Cayman Chemical #11187). We limited final DMSO concentration in all cultures to 0.2% because this concentration did not cause neurotoxicity based on MAP-2 staining, visual damage assessment, or mitochondrial activity in primary cultures of rat cortical neurons (K. Robertson, et al., 2012 (link)).
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6

Cytokine Signaling Modulation

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All recombinant cytokines were obtained from Peprotech except for hIL-12, mIL-12, TSLP, GM-CSF, TL1-A, and hTGF-β (R&D). Details of antibody clones and validation are provided in Source Data. Tofacitinib, FK506, BAY11, CAY10571, STAT5-INHIBITOR, and STAT6 inhibitor AS1517499 were purchased from Cayman and reconstituted in DMSO to 100 mM, 10 mM, 50 μM, 100 mM, 50 μM, and 50 nM stock concentrations, respectively.
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