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20 protocols using periostin

1

Decellularization of Porcine Esophagi

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Adult porcine esophagi were donated from Mary’s Ranch, a USDA-certified slaughterhouse (Pembroke Pines, FL, USA). The decellularizing agents Triton X-100, ammonium hydroxide, trypsin, EDTA, DNase I, RNase, phosphate buffered saline (PBS), sodium deoxycholate (SD), ethylenediaminetetraacetic acid (EDTA), and dimethyl sulfoxide (DMSO) were purchased from Fisher Scientific (Waltham, MA, USA). An antibiotic/antimycotic (AA) containing penicillin, streptomycin and amphotericin-B was purchased from Gibco (Carlsbad, CA, USA). A human esophageal squamous cell carcinoma cell line (KYSE30) was purchased from Sigma-Aldrich (St. Louis, MO, USA). A human primary esophageal fibroblast cells and related culture medium were obtained from Cell Biologics Inc (Chicago, IL, USA). RPMI 1640 cell culture medium was purchased from Gibco (Carlsbad, CA, USA). Primary antibodies collagen type 1, fibronectin, laminin, and periostin were purchased from Abcam (Cambridge, MA, USA). Immunohistochemistry reagents were purchased from Vector Laboratories (Burlingame, CA, USA). The Quant-iT Pico-Green dsDNA Assay Kit was purchased from Thermo Fisher Science (Waltham, MA, USA).
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2

Multicolor Immunohistochemistry for Bone Markers

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EDNRA and CD34 antibodies were purchased from Abcam (Waltham, MA, USA). Periostin and RGS5 antibodies were purchased from LSBio (Shirely, MA, USA). Ig kappa and lambda antibodies were purchased from ThermoFisher Scientific (Waltham, MA, USA). Immunohistochemistry was performed on bone biopsy sections as described [10 (link)]. Briefly, after peroxidase quenching (3% hydrogen peroxide, 10 min), slides were incubated with EDNRA antibody. Assays were completed with the Dako LSAB2 system-HRP kit (Agilent Pathology Solutions, Santa Clara, CA, USA) and counterstained with hematoxylin. For EDNRA, CD34 and Ig kappa or lambda double staining, the Multiview (mouse HRP/mouse AP) IHC kit (Enzo Life Sciences, Farmingdale, NY, USA) was used according to the manufacturer’s instructions. For sequential staining of EDNRA and CD34, RGS5, or Periostin, the double staining IHC kit (HRP/Green and Fast Red) was used (Abcam, Cambridge, MA, USA). To avoid false positives, the counterstaining step with hematoxylin was omitted. An Olympus BH2 microscope (Olympus, Melville, NY, USA) was used to obtain images with a SPOT 2 digital camera (Diagnostic Instruments Inc, Sterling Heights, MI, USA). Adobe Photoshop version 10 (Adobe Systems, San Jose, CA, USA) was used to process the images.
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3

Western Blot Analysis of Cardiac Fibrosis Markers

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Homogenized myocardial tissue and CFs were lysed using radio immunoprecipitation assay buffer (CST) containing phenylmethanesulfonyl fluoride (Solarbio). Total protein (20 μg) was separated by 10% sodium dodecyl sulfate – polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking in 5% bovine serum albumin diluted with tris‐buffered saline tween‐20 at room temperature for 1 h, membranes were incubated overnight at 4°C with primary antibodies against TGF‐β1 (1:1000, Abcam), Slit2 (1:1000, Proteintech), Robo1 (1:1000, Santa Cruz, Dallas, TX, USA), Smad2/3 (1:1000, CST), p‐Smad2 (1:1000, CST), p‐Smad3 (1:1000, CST), collagen I (1:1000, Abcam), PI3K (1:1000, CST), Akt (1:1000, CST), p‐PI3K (1:1000, CST), p‐Akt (1:1000, CST), and Periostin (1:1000, Abcam). Membranes were incubated with a horseradish peroxidase‐conjugated goat anti‐rabbit IgG secondary antibody (1:5000, CST) at room temperature for 1 h. Immunoreactive bands were visualized with ECL western blotting detection reagents (Millipore). Band densities were quantified by densitometry with Quantity One software (Bio‐Rad Laboratories, Hercules, CA, USA). To ensure equal loading of samples, protein expression level was normalized to GAPDH.
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4

Western Blot Analysis of Cellular Proteins

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Western blot was performed as the previously described [26 (link)]. Briefly, total protein was extracted using RIPA buffer added with PMSF and phosphatase inhibitors. Protein concentration was determined using BCA protein assay (Millipore, Switzerland). Then, 20 μg of protein was separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes (PVDF, Millipore, USA). After blocked with 5% non-fat milk, the membrane was incubated with primary antibody against PCNA (1:2000), Snail (1:1000), Vimentin (1:1000), E-cadherin (1:1000), N-cadherin (1:1000), integrin β1 (1:1000), Shc (1:1000), phosopho-Shc (1:2000), ERK1/2 (1:1000) or phosopho-ERK1/2 (Thr202/Tyr204) (1:2000) (Cell Signaling Technology, USA), periostin (1:1000), collagen I (1:5000), α-SMA (1:300) or anti-vitamin D receptor antibody (1:1000) (Abcam, USA), GAPDH (1:1000), tubulin (1:1000) or β-actin (1:1000) (Beyotime, China) at 4 °C overnight and the corresponding HRP-conjugated secondary antibody for 1 h at room temperature on the next day. The membrane was developed with enhanced chemiluminescence (ECL; New Cell & Molecular Biotech Co., China).
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5

Western Blot Analysis of Apoptosis Markers

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The cells seeded in the 6-well plates were collected, lysed in 2.5×sodium dodecyl sulfate (SDS) gel loading buffer (30 mM Tris-HCl, pH 6.8, 1% SDS, 0.05% bromphenol blue, 12.5% glycerol, and 2.5% mercaptoethanol) and boiled for 30 min; then, 20 μL of the protein was loaded onto 8% concentrated gel for protein electrophoresis separation. After that, the protein was transferred to the PVDF membrane (Millipore, Boston, MA), which was then blocked using 5% skim milk powder for 1 h at room temperature. Then, the membranes were incubated with primary antibodies specific for Cleaved-caspase 3, p-SMAD2, SAMD2/3(Cell Signaling Technology), EDA-Fibronectin, Periostin, Vimentin, α-SMA, p-Smad3 (Abcam), gapdh (#KC-5G5), and β-actin (#KC-5A08) (KangChen, Shanghai) at 4°C overnight, washed with PBST, and further incubated with a secondary antibody for 1 h. Finally, the immunoreactive protein was detected by a chemiluminescence assay (AI680RGB, GE HealthCare, United States) using the FDbio-Dura ECL kit (FDbio Science Biological Technology Co., LTD, China).
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6

Protein Expression Analysis by Western Blotting

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Western blotting was performed as described previously.47 (link) For animal samples, a total of 0.2 g peritoneum tissue for each animal was used to extract protein. Blots were incubated overnight at 4°C with polyclonal antibodies to periostin (Abcam), E-cadherin (BD Bioscience), α-SMA (Abcam), fibronectin (Dako), Snail (Abcam), GAPDH (Abcam), or β-actin (Sigma Chemical). The membranes were washed three times for 10 min in 1 × PBS with 0.1% Tween-20 and incubated in buffer A containing a 1:1,000 dilution of horseradish peroxidase-linked goat anti-rabbit or anti-mouse IgG (Santa Cruz Biotechnology). TINA image software (Raytest) was used to measure the band densities, and the changes in the optical densities of bands from the treated groups relative to untreated cells or tissues were used for analysis.
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7

Analyzing Cellular Signaling Pathways

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The 5 µm cryosections were incubated at 4°C overnight with primary antibodies: PDGFRβ (1:50, Cell signaling), procollagen (COL1A1 propeptide, 1:50, Thermo Fisher Scientific), periostin (1:50, Abcam). Secondary antibodies conjugated with Alexa 594 (Thermo Fisher Scientific) were used. Coverslips were mounted by using Vectashield with DAPI (Vector Laboratories, Burlingame, CA). Fluorescence images were recorded with FV10i fluorescence microscope (Olympus, Tokyo, Japan).
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8

Quantitative Western Blot Analysis

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Western blotting was performed as described previously46 (link). Blots were incubated overnight at 4 °C with polyclonal antibodies to periostin (Abcam, Cambridge, UK), fibronectin (Dako, Glostrup, Denmark), type I collagen (Southern Biotech, Birmingham, AL, USA), or β-actin (Sigma Chemical Co., Perth, Australia). The membranes were washed three times for 10 min in 1 × PBS with 0.1% Tween-20 and incubated in buffer A containing a 1:1000 dilution of horseradish peroxidase-linked goat anti-rabbit or anti-mouse IgG (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). TINA image software (Raytest, Straubenhardt, Germany) was used to measure the band densities, and the changes in the optical densities of bands from the treated groups relative to control cells or tissues were used for analysis.
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9

In vivo Differentiation of CLC and HERS Cells

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To analyze the CLC and HERS cell differentiation in vivo after induction with conditioned medium, cells were seeded on the top surfaces of iTDM and then transplanted in SD rat great omentum. Briefly, iTDMs were first placed in 24-well plate, then seeded with an initial amount of 5 × 105 CLC and HERS cells respectively, and cultured in vitro for 7 days according to Table 1 with changing of medium every 2 days. Afterwards, SEM examination was performed to detect the growth and morphology of cells on iTDMs, and implantation of iTDMs with cells in rat great omentum was carried out under deep anesthesia. iTDM without cell seeding was used as blank control. For each sample, at least three replicates were made. 4 weeks later, implants were harvested from the omentum under deep anesthesia. Samples were then fixed with 4% paraformaldehyde overnight at 4 °C, demineralized with 10% EDTA (pH 8.0) and embedded in paraffin. Sections were made and stained with hematoxylin and eosin (H&E). Immunohistochemical staining was also performed using antibodies for AMBN (Millipore, USA), AMGN (Millipore, USA), BSP (Abcam, UK), COL I (Abcam, UK) and periostin (Abcam, UK) at a dilution of 1:200 according to the manufacturers’ protocol. Histological images were taken under microscope (Olympus, Japan).
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10

Paraffin-embedded Tissue Immunostaining

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For the paraffin section, the Matrigel was broken with a cold KBM (Lonza). The hAOs were fixed in 4% PFA for 30 min and dehydrated with graded ethanol solutions for 30 min. Then, the blocks were embedded into paraffin and made into 4-μm sections. For hematoxylin and eosin (H&E) staining, the sections were rehydrated and then were stained. For immunofluorescence, antigen retrieval was achieved by citrate buffer, pH 6.0 at 121°C or 10 μg/mL proteinase K at 37°C. After cooling down, slides were treated with blocking solution, and the following first antibodies were used: OCT3/4 (Santa Cruz, TX, United States), OTX2 (R&D systems), Brachyury (R&D systems), SOX17 (R&D systems), PCNA (Abcam, CAM, United Kingdom), cleaved caspase-3 (Cell Signaling Technology, MA, United States), E-cad (BD biosciences, CA, United States), cytokeratin 14 (Abcam), p63 (GeneTex, CA, United States), collagen IV (Abcam), PITX2 (Abnova, Taiwan), DLX3 (Invitrogen, OR, United States), amelogenin (AMELX; Santa Cruz), and ameloblastin (AMBN; Biorbyt, UK, dentin sialoprotein (DSP; Santa Cruz), periostin (Abcam), cementum protein (CEMP1; Abcam), and human leukocyte antigen (hLA; Abcam). For visualization, anti-mouse or rabbit IgG conjugated with Alexa Fluor 488 or 555 dye (Invitrogen) was applied and observed under a confocal laser microscope (DMi8; Leica, Germany).
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