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Cy3 conjugated donkey anti rat

Manufactured by Jackson ImmunoResearch
Sourced in United States

Cy3-conjugated donkey anti-rat is a fluorescent-labeled secondary antibody that can be used to detect and visualize rat primary antibodies in various immunochemical applications. The Cy3 dye is a bright, red-orange fluorescent label that can be detected using appropriate fluorescence microscopy or flow cytometry equipment.

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9 protocols using cy3 conjugated donkey anti rat

1

Quantifying GABAergic Inputs to VIP+ Interneurons

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Two offspring of VIP-IRES-cre mice crossed with Ai14 reporter mice were transcardially perfused with 4% PFA in 0.1 m PB. The brain was removed from the skull and resectioned into 50-μm-thick horizontal slices. To estimate the GABAergic inputs received by tdTomato-expressing VIP+ INs, sections containing the BLA were processed for immunostaining with the following antibodies: guinea pig anti-VGAT (Synaptic Systems; 1:1000), rat anti-RFP (Chromotek; 1:1000), and rabbit anti-CB1 (Cayman Chemicals; 1:1000). VGAT was visualized with Alexa Fluor 488-conjugated donkey anti-guinea pig (Jackson ImmunoResearch; 1:500), tdTomato signal was enhanced by Cy3-conjugated donkey anti-rat (Jackson ImmunoResearch; 1:500), and CB1 was visualized with Cy5-conjugated donkey anti-rabbit antibody (Jackson ImmunoResearch; 1:500). Confocal images were obtained using a Nikon C2 confocal microscope (Plan Apo VC 20× objective; numerical aperture, 0.75; z-step size, 1 μm; xy, 0.62 μm/pixel). The image analysis was performed using Neurolucida Explorer.
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2

Immunohistochemical Staining of Drosophila Larvae

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Third-instar wandering larvae were dissected in PBS and fixed in 4% formaldehyde in PBS. Samples were washed three times after fixation with PBS containing 0.3% Triton X-100 and transferred to blocking solution (PBS containing 5% normal donkey serum and 0.3% Triton X-100). Specimens were incubated overnight at 4 °C with primary antibodies diluted in blocking solution. Primary antibodies were washed four times with PBS containing 0.3% Triton X-100 before the incubation overnight at 4 °C with secondary antibodies. Then, the samples were washed four times with PBS containing 0.3% Triton X-100. The primary antibodies used were as follows: rabbit anti-PatJ (1:1000), rat anti-Dpn (Abcam, 1:50), and guinea pig anti-L’sc (1:1200). The following secondary antibodies (Jackson) were used at 1:200 dilutions: FITC-conjugated donkey anti-rabbit, Cy3-conjugated donkey anti-rat, and Alexa Fluor 647-conjugated donkey anti-guinea pig. Specimens were mounted with VectaShield mounting media (Vector) and viewed on a Zeiss LSM880 confocal microscope. ZEN software (Zeiss) was used for preparing three-dimensional images.
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3

Quantifying Th17 and Treg Cells in Tissue

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Paraffin sections (6 μm) were deparaffinized, rehydrated, prepared, and double-stained with the following antibodies: (i) rat anti-CD4 (1:500; BD Pharmingen, California, USA) with rabbit anti-IL-17 (1:500; Novus Biologicals, Littleton, Colorado, USA) and (ii) rat anti-CD4 (1:500; BD Pharmingen, California, USA) with goat anti IL-10 (1:200; R&D, California, USA). The sections were incubated with the antibodies in a humidified chamber overnight at 4 °C. After being washed with PBS, the sections were incubated with a mixture of Alexa 488-conjugated donkey anti-goat (1:500; Jackson ImmunoResearch, Pennsylvania, USA) and Cy3-conjugated donkey anti-rat (1:500; Jackson ImmunoResearch, Pennsylvania, USA) secondary antibodies for 2 h at room temperature. All of the sections were counterstained with DAPI (1:10 000; #PP0131, Beyotime Biotechnology, Shanghai, China). Images were obtained using a FluoView confocal microscope (#FV3000, Olympus, Tokyo, Japan). Immunostaining quantification was completed using ImageJ software.
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4

Immunofluorescence Staining of CD11b and HVCN1

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Cells plated on coverslips were washed with PBS and then fixed with 4% PFA for 10 min at room temperature. After washing with PBS, coverslips were blocked with 5% donkey serum in PBS containing 0.3% Triton X-100 for 1 h at room temperature. Primary antibodies were incubated for 1∼3 h at room temperature at the following dilution, rat anti-CD11b (AbD serotec, Kidlington, United Kingdom, MCA711, 1:100) and rabbit anti-HVCN1 (Origene, TA328862, 1:100). Coverslips were washed with PBS, and incubated with the following fluorescently conjugated secondary antibody (1:500) for 0.5∼1 h at room temperature: Alexa Fluor 647 conjugated donkey anti-rat (Jackson ImmunoResearch, 712-605-153, 1:500), Cy3-conjugated donkey anti-rat (Jackson ImmunoResearch, 712-165-153), and Cy3-conjugated donkey anti-rabbit (Jackson ImmunoResearch, 711-165-152). Coverslips underwent a wash in PBS and were stained with DAPI for 10 min at room temperature. After the final wash in PBS, coverslips were mounted onto microscopy slides with FluorSave mounting medium (Millipore, 345789). Images were taken by Olympus BX53 or FV1000 confocal microscope.
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5

Immunostaining of Brain Sections

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The brains were frozen in Tissue-Tek optimal cutting temperature (OCT) matrix embedding medium and sectioned coronally at 40 μm, using a Leica CM1950 cryostat. Sections were immunostained using rabbit anti-glutathione S-transferase-1 (GST-mu1) YB1 (1:100, Cat. #Bio28YB1, Biotrin) and rat anti-Ki-67(1:250, Cat. #1456882, eBioscience). The following secondary antibodies were used: Alexa 488-conjugated donkey anti-rabbit (Cat. #711-485-152, Jackson ImmunoResearch) and Cy3-conjugated donkey anti-rat (Cat. #715-506-153, Jackson ImmunoResearch) used at 1:200 dilution using a protocol described previously.6 (link)
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6

Immunofluorescence Staining of Transfected Cells

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Transfected HEK293 and N2a cells were fixed with 4% PFA in phosphate-buffered saline (PBS) and blocked with Tris-buffered saline (TBS) containing 0.2% Triton, 5% goat serum and 5% horse serum.
All antibody incubations and wash steps were performed with TBS. Primary antibodies were c-myc (mouse IgG1K, 9E10, monoclonal, 1:100, #11 667 149 001, Roche), mCherry (rat IgG2a, 16D7, monoclonal, 1:2000, #M11217, ThermoFisher) and HA high affinity (rat IgG1, 3F10, monoclonal, 1:100, #11 867 431 001, Roche). The following highly cross-purified secondary antibodies were purchased from Jackson ImmunoResearch and used at a concentration of 1:250: DyLight™ 405-conjugated donkey anti rabbit (#711-475-152), Cy™3-conjugated donkey anti mouse (#715-165-151), Cy™3-conjugated donkey anti rat (#712-165-153), Alexa Fluor ® 647-conjugated donkey anti mouse (#715-605-151), Alexa Fluor ® 647-conjugated donkey anti rat (#712-605-153), and Cy™5-conjugated donkey anti rat (#712-175-153) . Nuclei were counterstained with DAPI, and cells were mounted with Mowiol containing 2.5% DABCO (1,4-diazabicyclo[2.2.2]octane).
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7

Immunofluorescence Staining of Angiogenic Markers

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Sections were permeabilized with 0.1% Triton-X100 (Fisher Scientific, Fair Lawn, NJ, USA) in PBS (PBS-T) and blocked in 5% goat serum. Sections were stained with one of the following primary antibodies: CD31 (1:20; BD Biosciences, San Jose, CA, USA), VEGFA (1:1000; Abcam), HIF1α (1:500; Novus Biologicals) and VHL (1:100; Santa Cruz Biotechnology). Secondary antibodies were Cy3-conjugated donkey anti-Rat (Jackson ImmunoResearch Laboratories Inc., Bar Harbor, ME, USA), Alexa Fluor 488 donkey anti-rat (Invitrogen), Alexa Fluor 488 and Alexa Fluor 555 goat anti-rabbit (Invitrogen), and Alexa Fluor 555 goat anti-mouse (Invitrogen) at 1:500. Sections were imaged using a Leica DM 5000B microscope at ×2.5 and ×40 magnification (Leica Microsystems Inc., Wetzlar, Germany).
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8

Immunohistochemistry of Drosophila Tissues

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Tissues dissected from larvae in 1 × phosphate-buffered saline (PBS (137 mM NaCl, 2.7 mM KCl, 4.3 mM Na2HPO4, 1.47 mM KH2PO4, pH 8)) at the indicated hours after egg deposition (AED) were fixed in 4% formaldehyde (Sigma) in PBS for 20 min at room temperature, washed in PBS containing 0.1% Triton-X-100 (PBT), blocked for 2 h in PBT containing 10% fetal bovine serum (PBS-TF) and incubated overnight with primary antibodies at 4 °C. The next day, tissues were washed, blocked in PBS-TF and incubated with secondary antibodies at 1/500 dilution (Cy3-conjugated donkey anti- rat or Alexa Fluor 647 goat anti-rat, Cy3-conjugated donkey anti-chicken from Jackson ImmunoResearch) for 2 h at room temperature. After washing, tissues were mounted in Vectashield containing DAPI for staining of DNA (Vector Labs). Fluorescence images were acquired using a Leica SP5 DS (× 20 and × 40 objectives) and processed using Adobe Photoshop CS5 or Image J. Wing areas were measured using Image J.
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9

Immunohistochemical Analysis of Angiogenic Factors

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Sections were permeabilized with 0.1% Triton-X100 (Fisher Scientific, Fair Lawn, NJ, USA) in PBS (PBS-T) and blocked in 5% goat serum. Sections were stained with one of the following primary antibodies: CD31 (1:20; BD Biosciences, San Jose, CA, USA), VEGFA (1:1000; Abcam), HIF1α (1:500; Novus Biologicals) and VHL (1:100; Santa Cruz Biotechnology). Secondary antibodies were Cy3-conjugated donkey anti-Rat (Jackson ImmunoResearch Laboratories Inc., Bar Harbor, ME, USA), Alexa Fluor 488 donkey anti-rat (Invitrogen), Alexa Fluor 488 and Alexa Fluor 555 goat anti-rabbit (Invitrogen), and Alexa Fluor 555 goat anti-mouse (Invitrogen) at 1:500. Sections were imaged using a Leica DM 5000B microscope at × 2.5 and × 40 magnification (Leica Microsystems Inc., Wetzlar, Germany).
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