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Nis elements basic research microscope imaging software

Manufactured by Nikon
Sourced in Japan

NIS-Elements Basic Research is a microscope imaging software developed by Nikon. The software provides a core functionality for controlling and acquiring images from a variety of microscopes. It offers a user-friendly interface for basic image capture, processing, and analysis.

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3 protocols using nis elements basic research microscope imaging software

1

Evaluating Neuroapoptosis in Hippocampus

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Neuroapoptosis was assessed using the TUNEL assay, as previously described by Li et al (41 (link)). Brain tissue sections (5-µm-thick) were sliced in the same plane of the hippocampal region of each mouse and subjected to analysis using the DeadEnd™ fluorometric TUNEL system (Promega Corporation, Madison, WI, USA). Tissue sections were protected from direct light during the assay. TUNEL-positive cells in the CA1 and CA3 regions of the hippocampus were observed and analyzed using NIS-Elements Basic Research microscope imaging software (version, 4.0; Nikon Corporation).
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2

Immunohistochemical Analysis of Liver Tissue

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Formalin‐fixed and paraffin‐embedded liver tissue specimens were stained with haematoxylin and eosin, and immunostained using antibodies against Ki‐67 (1 : 200; Abcam, Cambridge, UK), macrophage‐related marker CD68 (1 : 200; Chemicon International, Temecula, California, USA), M1‐related marker iNOS (1 : 100; Santa Cruz Biotechnology, Santa Cruz, California, USA) and M2‐related marker CD163 (1 : 500; Abcam), as described previously20. The histological analyses were performed in a blinded fashion and the number of positive cells was determined in five random visual fields (original magnification × 200) per section using a Nikon ECLIPSE NiE400 microscope and NIS Elements Basic Research Microscope Imaging Software (Nikon, Tokyo, Japan).
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3

Immunofluorescent Staining of Coronavirus Infection

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L2 cells were infected at an MOI of 1 PFU/cell for 8 h with MHVWT, MHV-MERSWT, MHV-SC2013WT, or MHV-HKU5WT. Cells were washed with Dulbecco’s phosphate-buffered saline (DPBS) (Gibco) and then fixed with 4% paraformaldehyde in DPBS (Gibco). After fixation, cells were permeabilized with 0.1% Triton in DPBS (Gibco) and then blocked with bovine serum albumin. Cells were then stained with mouse monoclonal anti-nucleocapsid (1:200) and rabbit anti-Flag polyclonal (Sigma) (1:2,000) antibodies. After the cells were washed, secondary staining with Alexa Fluor 488-labeled goat anti-mouse (1:400) and Alexa Fluor 594-labeled goat anti-rabbit (1:1,000) antibodies was performed. The cells were washed once more, and the nuclei were then stained with 4′,6′-diamidino-2-phenylindole (DAPI). Stained cells were imaged at a magnification of ×400 on an Eclipse TE2000-U fluorescence microscope (Nikon Instruments, Inc.). Images were acquired using NIS-Elements Basic Research microscope imaging software (Nikon Instruments, Inc.). This was performed at least twice for all viruses.
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