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6 protocols using ar9961

1

SARS-CoV-2 Antibody Immunohistochemistry

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Immunohistochemical staining was performed using the Leica Bond Polymer Refine staining system (Leica Microsystems DS9800). Onboard de-waxing was performed in accordance with the standard Leica Bond protocol and staining undertaken using IHC Protocol F with the following adaptations: additional non-specific block prior to primary antibody incubation (10% normal horse serum (Biorad), 1x Casein (Vector Labs) in PBS) and extended hematoxylin staining time (10 minutes). Antibodies were diluted to their optimal staining concentration in Bond primary antibody diluent (Leica, AR9352) as follows: SARS-CoV-2 Spike protein: 1:1000 (Leica, AR9961) 30minutes, (Rabbit PAb 40150-T62-COV2-SIB, Stratech Scientific/SinoBiologicals), SARS-CoV-2 Nucleoprotein: 1:2000 (Leica, AR9961) 30minutes, (Mouse Mab 40143-MM05-SIB, Stratech Scientific/SinoBiologicals). For both antibodies antigen unmasking was undertaken using Heat Induced Epitope Retrieval (HEIR) solution 1 (Leica AR9961) for 30 minutes at 100 o C.
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2

Immunohistochemical Staining for SARS-CoV-2 Proteins

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Immunohistochemical staining was performed using the Leica Bond Polymer Refine staining system (Leica Microsystems DS9800, Wetzlar, Germany). Onboard de-waxing was performed in accordance with the standard Leica Bond protocol and staining undertaken using IHC Protocol F with the following adaptations: additional non-specific block prior to primary antibody incubation (10% normal horse serum (Biorad, Hercules, CA, USA), 1× Casein (Vector Labs) in PBS) and extended hematoxylin staining time (10 min). Antibodies were diluted to their optimal staining concentration in Bond primary antibody diluent (Leica, AR9352) as follows: SARS-CoV-2 Spike protein: 1:1000 (Leica, AR9961) 30 minutes, (Rabbit PAb 40150-T62-COV2-SIB, Sino Biologicals, Beijing, China), SARS-CoV-2 Nucleoprotein: 1:2000 (Leica, AR9961) 30 minutes, (Mouse Mab 40143-MM05-SIB, Stratech Scientific/SinoBiologicals). For both antibodies antigen unmasking was undertaken using Heat Induced Epitope Retrieval (HEIR) solution 1 (Leica AR9961) for 30 min at 100 °C.
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3

Optimized IHC Protocol for SARS-CoV-2 Detection

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Immunohistochemical staining was performed using the Leica Bond RXm automated stainer, Bond Polymer Refine staining system (Leica Microsystems DS9800) and associated Leica Bond consumables. Onboard de-waxing was performed in accordance with the standard Leica Bond protocol and staining undertaken using IHC Protocol F with the following adaptations: additional non-specific block prior to primary antibody incubation (10% normal horse serum (Biorad), 1 × Caesin (Vector Labs) in PBS) and extended haematoxylin staining time (10 min). Antigen unmasking to allow antibody binding was undertaken using optimised conditions for each antibody/antigen combination. Antibodies were diluted to their optimal staining concentration in Bond primary antibody diluent (Leica, AR9352). SARS-CoV-2 Spike protein: 1:1000 HIER1 (Leica, AR9961) 30 min, (Rabbit PAb 40150-T62-COV2-SIB, Stratech Scientific /SinoBiologicals, SARS-CoV-2 Nucleoprotein: 1:2000 HIER 1 (Leica, AR9961) 30 min, (Mouse Mab 40143-MM05-SIB, Stratech Scientific /SinoBiologicals.
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4

Immunohistochemistry of GFAP, MN1 and IGF2

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Immunohistochemistry was done using 4 µ thick sections of FPPE tissue. Immunohistochemical stains for GFAP clone EP672Y (Cell Marque 258R-16, lot 32653, 1:25), MN1 (Proteintech 24697-1-AP, lot 00021048, 1:40) and IGF2 (Abcam; ab9574, lots GR31975-61, and GR31975-64, 1:500) were performed on the Leica Bond III using Leica Epitope Retrieval 1 (Leica; AR9961) for GFAP, and Epitope Retrieval 2 (Leica; AR9640) for MN1 and IGF2. Retrieval was performed for 20 min, followed by 15 min primary antibody incubation, and Bond Polymer Refine Detection (Leica; DS9800). Hematoxylin was used as a counterstain. Positive IGF2 staining was defined as dark granular perinuclear cytoplasmic staining.
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5

Immunofluorescence Analysis of Cells and Tissues

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Immunofluorescence analysis was performed according to our previous study [25 (link)]. First, the tumor and/or major organ tissues were embedded in paraffin and cut into 2-μm sections using a slicer (Leica, Bensheim, Germany). 4T1 and HeLa cells cultured on glass coverslips were also treated with different preparations for 4 h. Then, the cells and tissue sections were fixed with 4% paraformaldehyde at 4 °C for 30 min and antigens were retrieved with an AR buffer (Leica, AR9961) and permeabilized with 0.1% Triton X-100 in PBS for 20 min. After blocking with 5% BSA at room temperature for at least 30 min, the samples were incubated with primary antibodies at 4 °C overnight. After washing three times with PBS, the samples were incubated with an indirect immunofluorescence secondary antibody at room temperature for 1 h, while cell nuclei were stained with DAPI for 5 min in the dark. Images were acquired with a confocal fluorescence microscope (ZEISS, LSM 980 with Airyscan 2, Oberkochen, Germany). For autophagy flux analysis, HeLa cells were transfected with mCherry-GFP-LC3B tandem reporter and imaged at 48 h post-transfection by confocal fluorescence microscopy.
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6

Immunohistochemical Profile of Cytokeratins

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Serial sections at 3.5 μm were cut from Formalin Fixed Paraffin Embedded (FFPE) tissue blocks, mounted onto adhesive slides (Surgipath Snowcoat) and dried at 65ºC for 15 minutes. Each series of sections were stained on Bond III Automated Immunohistochemistry System Leica Stainer using Leica Bond Polymer Refine detection with a DAB chromogen (0.5% Copper Sulphate in PBS buffer). All antigen retrieval methods were performed on-board, following Queen Alexandra Hospital laboratory protocols, using antigen-unmasking solutions: Epitope Retrieval Solution 1 (ER1) at pH 6.0 (Leica, AR9961) and Epitope Retrieval Solution 2 (ER2) at pH 9.0 (Leica, AR9640) for 20 minutes. Each run included a positive control (normal endometrium) and a negative control where the primary antibody was omitted.
Cytokeratin markers tested were, as follows: AE1/3, CAM5.2, HMWCK, MNF116, CK5, CK6, CK7, CK8/18, CK14, CK17, CK19 and CK20. Additionally, staining for ER, PR, CD10 and Cyclin D1 was performed. Details of antibodies (sources, clones, working dilutions and antigen retrieval pre-treatment) are summarised in Table 2.
The staining was assessed with a semi-quantitative method as shown in Table 3.
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