Ubiquitin from bovine erythrocytes
Ubiquitin from bovine erythrocytes is a purified protein that is commonly used in research applications. It is a small, highly conserved protein that plays a crucial role in the regulation of protein degradation and various cellular processes. This product provides a reliable source of ubiquitin for researchers studying the ubiquitin-proteasome system or other related areas of cellular biology.
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10 protocols using ubiquitin from bovine erythrocytes
Protein Mixture Preparation for Mass Spectrometry
ESI-MS Analysis of Proteins
Protein Sample Preparation Protocol
Optimizing Mass Spectrometry Experiments
(≥98% purity) and ammonium acetate were purchased from Sigma
Chemical Co. (St. Louis, MO, USA). Acetic acid and HPLC-grade water
were obtained from Fisher Scientific (Leics, UK). All reagents were
used without further purification. Two 10 μM solutions were
prepared by dissolving ubiquitin in either aqueous 1% Acetic acid
or in 100 mM ammonium acetate aqueous solution, corresponding to the
partially unfolded (charge states 7+ and 8+) and the native protein
conformations (charge states 5+ and 6+), respectively. Papaverine
hydrocloride (99%) was purchased from ACROS Organics and a 0.1 mM
stock solution was prepared in ACN/H2O/AcOH 90:10:0.1 (v/v/v).
A series of dilutions were performed to final concentrations of 0.003,
0.03, 0.15, and 0.3 μM in order to map the stability diagram
of the Omnitrap under different space charge loads. Bradykinin acetate
salt (≥98%) was purchased from Sigma-Aldrich, and 1.2 μM
solution was prepared in H2O/MeOH/AcOH 60:39:1 (v/v/v)
in order to measure the secular frequency of the ions under variable
space charge loads and across a wide range of excitation amplitudes.
Oxidized insulin chain B from bovine pancreas (≥80%) and myoglobin
from equine heart were purchased from Sigma-Aldrich. Insulin chain
B 10 μM solution was prepared in ACN/H2O/AcOH 50:49.9:0.1
(v/v/v) and 10 μM myoglobin solution was prepared in H2O/MeOH/AcOH 49:49:2 (v/v/v).
Peptide Synthesis and Characterization
In vitro Ubiquitylation Assay for NQO1
In vitro Autoubiquitination Assay of RNF183
pCMV-HA-RNF183 or pCMV-HA-RNF183-CC/AA. Twenty-four hours after transfection,
cells were lysed on ice in NDLB, pH=8.0, clarified at 12,000gfor 10 min and then immunoprecipitated for 4 h with
anti-HA antibody (Covance) and Protein A/G beads (Life Technologies). Beads were
then washed three times in NDLB with 350 mM NaCl and two times in
ligase buffer: 50 mM Tris pH 7.5, 150 mM KCl,
1 mM MgCl2. After the final wash, beads were resuspended in ligase
buffer containing 100 nM recombinant E1 (Enzo Life Sciences),
1 μM recombinant UbcH5b (Enzo Life Sciences),
5 μM ubiquitin from bovine erythrocytes (Sigma), plus or minus
5 mM Mg2+ ATP and incubated for 1.5 h at
37 °C.
Profiling Protein Oxidation by FPOP
modifications.8 (link) Ubiquitin from bovine erythrocytes (Sigma Aldrich)
was prepared in 10 mM phosphate-buffered saline (PBS; Sigma Aldrich) at a final
concentration of 0.18 mg/mL in a 50 μL final volume.
to the protein sample as the hydroxyl radical scavenger at a final concentration of 40 mM.
The effect of five different CPEs (azone (AZ), dimethylacetamide (DMAC), dimethylformamide
(DMF), oleic acid (OA), or propylene glycol (PG); Sigma Aldrich) on the extent of FPOP
modification was tested at various concentrations (0, 0.1, 0.5, 1, and 2%). Immediately
prior to FPOP, hydrogen peroxide was added to a final concentration of 7.5 mM. The 50
μL sample was infused using a syringe pump through a 150 μm inner diameter
(i.d.) fused silica capillary (Polymicro Technologies) using a 34.19 μL/min flow
rate, 20% exclusion fraction, 2.58 mm spot width, and 10 Hz laser frequency. A 248 nm KrF
excimer laser (GAM Laser, Inc.) was used to irradiate the sample and photolyze hydrogen
peroxide at 161 mJ/pulse. Samples were collected in a vial containing a final
concentration of 30 mM methionine and 500 nM catalase to quench excess OH radicals and
hydrogen peroxide, respectively. A total of three laser-irradiated samples and three
controls (no laser irradiation) were prepared for each condition.
Protein Standard Preparation Protocol
MALDI-TOF Lipid Profiling Protocol
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