The largest database of trusted experimental protocols

5 protocols using ab2182

1

Immunohistochemical Analysis of Ocular Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transplanted tissues were fixed with 4% paraformaldehyde. Paraffin embedded tissue sections were stained with haematoxylin/eosin. Then, the paraffin sections were deparaffinized with xylene and sequential 100%, 95%, 80%, 70% ethanol treatments for 5 min each. The sections were treated with 10 mM citric acid (pH 6) at 95°C for 50 min followed by permeation with 0.4% Triton-X in PBS at room temperature for 30 min. The deparaffinized sections were stained with antibodies against human Lamin-A (1∶200; ab108595; Abcam), BEST1 (1∶200; ab2182; Abcam) and Ki-67 (1∶400; #9449; Cell Signaling). Nuclei were stained with Hoechst 33258 (Dojindo) and DAPI (Dojindo). hiPSC-derived RPE cells were collected in suspension and fixed with 4% paraformaldehyde followed by staining with antibodies against POU5F1 (OCT3/4) (1∶ 100; sc-5279; Santa Cruz), or BEST1 (1∶ 200; ab2182; Abcam). Antibodies were visualized with Alexa Fluor 488 goat anti-mouse (1∶ 1,000; Invitrogen) or Alexa Flour 488 goat anti-rabbit (1∶ 1,000; Invitrogen). Fluorescent microscopic images were captured with a fluorescent microscope (Olympus BX51, IX71, Tokyo, Japan).
+ Open protocol
+ Expand
2

Immunocytochemistry and Western Blot Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
The primary antibodies used for immunocytochemistry included rabbit anti-zonula occludin (ZO)-1 (617300; Invitrogen, Carlsbad, CA, USA), mouse anti-ZO-1 (339100; Invitrogen), mouse anti-cellular retinaldehyde-binding protein (CRALBP; ab15051; Abcam, Cambridge, MA, USA), rabbit anti-paired box 6 (Pax-6; PRB-278P; BioLegend, San Diego, CA, USA), and mouse anti-Bestrophin (BEST)1 (ab2182; Abcam). The secondary antibodies used were goat anti-mouse and goat anti-rabbit IgG conjugated to Alexa Fluor 488, 594, or 647 (Life Technologies). For Western blotting, the antibodies used included rabbit anti-PGC1 alpha (NBP1-04676; Novus Biologicals, Littleton, CO, USA), rabbit anti-b-Actin (CST 4967S; Cell Signaling Technology, Danvers, MA, USA), rabbit anti-PTEN (CST 9552S; Cell Signaling Technology), rabbit anti-SIRT1 (CST 9475; Cell Signaling Technology), rabbit anti-SIRT3 (ab217319; Abcam), rabbit anti-TFAM (CST 8076S; Cell Signaling Technology), mouse anti-TOMM20 (ab56783; Abcam), and mouse anti-VDAC (ab14734; Abcam). The secondary antibodies used were goat anti-mouse IgG and goat anti-rabbit IgG (H+L; Southern Biotech, Birmingham, AL, USA). The details of the antibodies used are listed in Supplementary Table S2.
+ Open protocol
+ Expand
3

Immunofluorescence Staining of Cellular Organelles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed in 4% formaldehyde (Sigma, 47608) for 15 min at room temperature and permeabilised with 0.25% Triton X-100 (Sigma, T8787) for 15 min, followed by treatment with blocking solution (3% BSA in PBS, Sigma, A3311) for 30 min at room temperature. Cells were treated with primary antibodies anti-bestrophin (Abcam, ab2182, 1:300), anti-sodium potassium ATPase (Alexa Fluor® 488 conjugate) (Abcam, ab197713, 1:50), pericentrin (Abcam, ab28144, 1:500), MERTK (Bethyl, A300-222A, 1:200), ARL13B (Proteintech, 17711-1-AP, 1:500), collagen IV (Abcam, ab6586, 1:200), PRPF31 (Abnova, PAB7154, 1:500) and SNRPB monoclonal antibody (Y12) (ThermoFisher, MA5-13449, 1:500), overnight at 4 °C, and with secondary antibodies anti-rabbit FITC (Sigma, T9887, 1:500) or anti-mouse FITC (Jackson Immuno Research, 715-095-151, 1:500) and anti-mouse Cy3 (Jackson Immuno Research, 115-165-003, 1:500) or anti-rabbit Cy3 (Jackson Immuno Research, 111-165-003, 1:500) diluted in PBS for 1 h at room temperature. Washes with PBS were carried out between and after treatments. Finally, cells were treated with the nuclear stain-DAPI (Partec, 05-5005), and imaged using a Nikon A1R confocal microscope in combination with the associated NIS Elements software. All antibody details are shown in Supplementary Data 6.
+ Open protocol
+ Expand
4

Immunofluorescence Staining of hRPE Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The collected hRPE cells were washed three times with Dulbecco's phosphate-buffered saline solution (Nacalai Tesque, Kyoto, Japan) before being fixed with cold methanol for 10 minutes at 30°C following the procedures reported previously.16 (link) Briefly, cell permeabilization was achieved with 0.2% Triton X-100 for 15 minutes at room temperature (RT). The appropriate Alexa Fluor-conjugated secondary antibodies were used for one hour at RT in the dark. Then, fluorescence microscopy imaging was performed (BZ9000; Keyence, Osaka, Japan). The primary antibodies used included ZO-1 (1:500 dilution) (Invitrogen 617300), mouse anti-ZO-1 (1:500 dilution; Invitrogen 339100), mouse anti-CRALBP (1:200 dilution; Abcam ab15051), rabbit anti Pax-6 (1:500 dilution; Biolegend PRB-278P), and mouse anti-BEST1 (1:500 dilution; Abcam ab2182).
+ Open protocol
+ Expand
5

Immunofluorescent Staining of Retinal Pigment Epithelium

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells fixed with 4% paraformaldehyde (8 min, 4 °C), permeabilized and blocked with a solution of 0.2% v/v Triton X-100 and 5% BSA in PBS (60 min, 4 °C) were incubated with the following primary antibodies (all in PBS—5% BSA, 4 °C, overnight): ZO-1 (#339100, 10 μg/mL, Life Technologies), PMEL (ab137062, 5 μg/mL, Abcam), BESTROPHIN (ab2182, 2 µg/mL, Abcam), OCCLUDIN (33-1500 (OC-3F10), 3 µg/mL, Thermo Fisher Scientific), RPE65 (ab235950, 10 μg/mL, Abcam), washed three times in PBS and incubated with isotype-specific secondary antibodies (Alexa Fluor 568 Goat Anti-Mouse IgG, # A-11031, 1:1000; and Alexa Fluor 488 Goat Anti-Mouse IgG, # A-11029, 1:1000 both from Thermo Fisher Scientific). Nuclei were counterstained using bisBenzimide Hoechst 33342 trihydrochloride, Sigma-Aldrich) and mounted in ProLong™ Gold Antifade Mountant. The specificity of the staining was verified by the absence of staining in negative controls consisting of the appropriate negative control immunoglobulin fraction (Dako). Images were acquired on a Zeiss Axio Imager M2 fluorescent microscope using ZEN Blue 3.5 software (Zeiss).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!