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4 protocols using alexa fluor 647 conjugated donkey anti mouse secondary antibody

1

Immunofluorescent Characterization of Neural Progenitor Cells

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Neural progenitor spheres were plated on poly-lysine and laminin-coated coverslips from 24 h to 43 days (striatal differentiations) before being fixed in 3.2% paraformaldehyde (EMS). Cells were then permeabilized using 0.2% Triton X-100 in PBS for 10 min at room temperature before incubation with mouse monoclonal anti-HTT (Millipore MAB5374; 1:1,000), rabbit polyclonal anti-GFP (LifeTechnologies A11122; 1:1,000), and chicken anti-βIIITubulin/TUJ1 (Aves labs, TUJ; 1:200) overnight at 4°C and then washed in PBS. The slides were further incubated with Alexa Fluor 488-conjugated donkey anti-rabbit secondary antibody (Invitrogen, A21206; 1:500), Alexa Fluor 647-conjugated donkey anti-mouse secondary antibody (Invitrogen, A31571; 1:500), and Alexa Fluor 594-conjugated goat anti-chicken secondary antibody (Invitrogen, A11042; 1:500) for 60 min at room temperature, followed by PBS washes. After a 5 min incubation with 4′,6-diamidino-2-phenylindole (DAPI), slides were mounted with fluoromount (Sigma-Aldrich, F4680) and observed under fluorescence microscope (Leica).
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2

Glucocorticoid Receptor Quantification in Brain Slices

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After air dried and post-fixed in 4% PFA for 10 minutes at room temperature, the brain slices (10 μm) were blocked in 5% donkey serum (Jackson ImmunoResearch) containing 0.3% Triton X-100 (Sigma-Aldrich) for 1 hour at room temperature and then incubated with mouse monoclonal [BuGR2] anti-glucocorticoid receptor primary antibody (Abcam, 1:100) overnight at 4 °C. The brain slices were washed for 3 times and incubated with Alexa Fluor 647-conjugated donkey anti-mouse secondary antibody (Invitrogen, 1:200) for 1 h at room temperature. The nucleus was stained by Hoechst (Invitrogen). Brain slices were mounted and coverslipped using fluorescent mounting media (Dako). All slices were scanned with a Zeiss LSM 710 confocal microscopy (Zeiss). The number of GR-positive cells was determined using the Image J software with color deconvolution plug-in and Cell Counter analysis tools (NIH), and was presented as a percentage of total cell number. Low magnification images were gained using Image J stitching plug-in (Preibisch et al., 2009 (link)).
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3

CREB Immunofluorescence in Mouse Hippocampus

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The test was conducted as described previously61 (link),62 (link). Brains were removed and then placed in 4% paraformaldehyde overnight. The fixed brains were washed with PBS and dehydrated in 5–30% sucrose at 4 °C for 48 h. Each brain (20 μm thick) was sectioned with a cryostat (MICROM HM 525, Walldorf, Germany), then sections were blocked in PBT (0.05% Tween 20 in 1X PBS) containing 0.3% Triton X-100 (Sigma) and 3% donkey serum (Genetex) for one hour at room temperature. The following primary antibodies were used for immunofluorescence: mouse anti-CREB polyclonal antibody (1:500, 35-0900, Invitrogen), and. Brain sections were incubated with the primary antibodies at 4 °C overnight, and washed three times in PBT. Brain sections incubated for 2 h with Alexa Fluor 647-conjugated donkey anti-mouse secondary antibody (1:500, Invitrogen). After the incubated brain sections were washed three times with PBT, the sections were covered with Vectashield HardSet Antifade mounting medium with DAPI (Vector Laboratories, H‐1500) and imaged with a confocal microscope (LSM800; Carl Zeiss). For cell counting, the measurement of the analyzing particles using the Image J software was used to count specifically immuno-stained cells in the hippocampus.
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4

Detection of Viral Infection by Flow Cytometry

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Cells were trypsinized and washed two times with FACS buffer, as above. Fixation, permeabilization, and staining were performed according to the BD Cytofix/Cytoperm protocol including a 15-minute block step with BD rat anti-mouse CD16/CD32 Fc block. To stain infected cells, a mouse monoclonal anti-σ3 antibody (clone 10C1) at a concentration of 1 μg/mL was added for 30 minutes at 4°C. After two washes, an AlexaFluor-647 conjugated donkey anti-mouse secondary antibody (Invitrogen) was added at a 1:1000 dilution.
In both virus systems, data was collected on a BD LSR II Flow cytometer running FacsDiva software. A minimum of 50,000 events was collected for each sample. Subsequent data analysis was performed using FlowJo (v10.1), gating for single cells. The threshold for positivity was determined based on a mock-infected control population stained with the relevant antibodies.
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