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3 protocols using anti myod c 20

1

Congo Red Secretion Assay Protocol

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Congo Red secretion assays were performed
as previously described.29 (link) Briefly, the
total cell and supernatant fractions were separated by two centrifugations
at 20 000g for 2 min. The cell pellet of the initial centrifugation
was taken as the total cell fraction. The pellet was resuspended in
200 μL of protein loading dye (40% glycerol, 240 mM Tris/HCl
pH 6.8, 8% SDS, 0.04% bromophenol blue, 5% beta-mercaptoethanol),
and 5 μL was loaded onto a 10% SDS-PAGE gel for analysis. Proteins
in the supernatant were precipitated with trichloroacetic acid (TCA)
(10% v/v) and resuspended in 50 μL of protein loading dye. Ten
microliters of supernatant sample was loaded onto a 10% SDS-PAGE gel
for analysis. Protein content of the pellet and supernatant fraction
were assessed by western blotting with anti-FLAG (Sigma), anti-β-lactamase
(sc-66062, Santa Cruz), or anti-MyoD (C-20, Santa-Cruz) antibodies.
For type 3 secretion expression analysis, membranes were probed with
anti-IpaB and anti-IpaD antibodies, proteins in the type 3 secretion
needle apparatus. Controls for cell lysis were conducted using anti-DnaK
(a cytoplasmic protein found in Shigella and E. coli) (Abcam ab69617).
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2

Immunofluorescence Antibody Panel

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Antibodies used were anti-H3K9me3 (ab8898, abcam), anti-Myh (MF20, DSHB), anti-tubulin (E7, DSHB), anti-MyoD (c-20, Santa Cruz), anti-Myogenin (F5D, Santa Cruz), anti-HNRNPA2B1 (sc-374052, Santa Cruz), anti-PDS5B (A300-537A, Bethyl), anti-SMC3 (ab9263, Abcam) and anti-NIPBL (A301-779A, Bethyl), anti-RNA polymerase II (Abcam), and anti-FLAG (Sigma). Alexa Fluor® 658 goat anti-mouse (H+L) was used as secondary antibodies for immunofluorescence.
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3

Whole Cell Extract Protein Analysis

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For Whole Cell Extracts preparation, cells were pelleted by centrifugation, resuspended in ice-cold RIPA buffer (10 mM TrisHCl pH 8.0, 1 mM EDTA, 0.5 mM EGTA, 0.1% SDS, 0.1% sodium deoxycholate, 140 mM NaCl, 1% Triton X-100, 1 mM PMSF, Protease inhibitor cocktail) and incubated for 30 min on ice, with occasional shaking. Samples were centrifuged at 13,000 rpm for 10 min at 4°C and the supernatant recovered and quantified using the Bradford protein assay.
20 μg of extracts were loaded on a 4–10% SDS-polyacrylamide gel and analyzed by Western blot using primary antibodies and a peroxidase-conjugate secondary antibody (Sigma-Aldrich). Primary antibodies: anti-NF-YA (G-2, Santa Cruz), anti-NF-YB (GeneSpin), anti-NF-YC (home-made) anti-Vinculin (H-10, Santa Cruz), anti-MyHCs (MF20, DHSB), anti-Myogenin (IF5D, DHSB), anti-MyoD (C-20, Santa Cruz), anti-Myf5 (C-20, Santa Cruz), anti-Pax3 (DHSB), anti-Snai1 (C15D3, Cell Signaling). Western blot experiments were performed on three independent biological replicates.
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