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9 protocols using cellometer auto t4 cell viability counter

1

Phenotypic Characterization of Lymphocytes

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Cells isolated from spleens and graft-draining axillary and brachial lymph nodes (dLN) were stained with anti-CD4 (BD Biosciences), anti-CD8 (Invitrogen) and anti-Thy1.1 (BD Biosciences). For phenotypic analysis cells were also surface-stained with anti-PD-1 (BioLegend), anti-2B4 (BD Biosciences or eBioSciences), anti-Thy1.1 (BD Biosciences), anti-LAG-3 (BioLegend), anti-CD127 (BioLegend), anti-KLRG-1 (eBioSciences), anti-CD44 (BioLegend or BD Biosciences), and anti-CD48 (BioLegend). Absolute numbers of lymphocytes from the spleen and draining lymph nodes were calculated using a Cellometer Auto T4 Cell Viability Counter (Nexcelom) according to the manufacturer’s instructions. Samples were analyzed on an LSRII flow cytometer (BD Biosciences). Data was analyzed using FlowJo 9 software (Treestar, San Carlos, CA) and Prism 6 software (GraphPad Software Inc.). For intracellular cytokine staining, lymphocytes were restimulated ex vivo with 1 μg/mL phorbol 12-myristate 13-acetate (PMA) (Sigma Life Sciences) and 1 μg/mL ionomycin (Sigma Life Sciences) where indicated, in the presence of 1 μg/mL Brefeldin A (BD Biosciences) for 4 hours. The Fix/Perm intracellular staining kit (BD Pharmingen) was used to detect IL-2 (BD Biosciences), TNF (BioLegend), and IFN-γ (BD Biosciences), according to manufacturer’s instructions.
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2

HSPC Expansion on MSC Substrates

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We refer to mobilized human bone marrow-derived CD34+ cells (from the Fred Hutchinson Cancer Research Center, Seattle, WA, USA) as hematopoietic stem and progenitor cells (HSPCs). After the same 4–5 days of MSC expansion on top of PDMS wells as conducted for secretome characterization, we aspirated to remove the MSC expansion media and directly added HSPCs on top of the MSCs. In the co-culture experiments, we co-cultured HSPCs with unsorted MSCs grown on the three PDMS substrata and on tissue culture polystyrene as a comparison to standard culture practice. We expanded the HSPCs in expansion media on top of MSCs for ~ 5–8 days as described previously [35 (link)]. We aspirated to harvest HSPCs from the MSCs and collected any remaining HSPCs with vigorous PBS washing and collection. To determine proliferation, we counted HSPCs with the Cellometer Auto T4 Cell Viability Counter (Nexcelom Bioscience, Lawrence, MA, USA) for all conditions. We conducted flow cytometry as described previously to assay HSPC surface marker expression of CD34 (eBioscience, San Diego, CA, USA) 11–0349-42) and CD123 (eBioscience 48–1238-42) [35 (link)].
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3

Cell Proliferation and Survival Assays

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Proliferation was analyzed with Orangu Cell Proliferation Assay Kit (Cell Guidance Systems, Cambridge, UK) used following the manufacturer’s protocol. Cells were counted with Cellometer Auto T4 Cell Viability Counter (Nexcelom, Lawrence, USA). For a calibrating curve 1000, 2500, 5000, 7500, 10000 and 15000 wildtype cells were seeded and incubated for 24 h at 37°C. For correct cell number determination after one day, one well of each condition was recounted.
For survival assay 5000 cells in 100 μl were seeded one day before treatment. Cells were incubated with chemotherapeutic agents cisplatin (CDDP) (P4394, Sigma Aldrich) and 5-Fluoro-2´-deoxyuridine (5-FUDR) (Sigma Aldrich) for 21 h and subsequently Orangu Cell Proliferation Assay Kit was applied.
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4

Radiation Sensitivity of HNSCC Cells

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Irradiation of HNSCC cells was performed as described previously [39 (link)]. Cells were pretreated with drug or control and then exposed to radiation (6Gy) using a γ-ray irradiator. Twenty-four hours later, cell viability was assessed using a Cellometer® AutoT4 Cell Viability Counter (Nexcelom Bioscience, Lawrence, MA).
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5

Single-Cell Leukocyte Isolation from Murine Spleen and CNS

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Spleens were removed from euthanized animals under sterile conditions and single cell suspensions of leukocytes were prepared by disaggregation of the tissue through a 100μm nylon mesh (BD Falcon, Bedford, MA). Cells were washed once with RPMI 1640 supplemented with 10% heat-inactivated FBS (hiFBS; Thermo Scientific, Waltham, MA), then incubated with RBC Lysis Buffer (eBioscience, Inc., San Diego, CA) for 1 min to remove red cells, then washed in RPMI 1640+hiFBS. Cells were enumerated at a 1:1 dilution with 0.2% trypan blue stain (Life Technologies, Grand Island, NY) using a Cellometer Auto T4 Cell Viability Counter (Nexcelom, Lawrence, MA), washed, and resuspended at 107 cells/mL in stimulation medium (RPMI 1640 containing 10% FBS [Thermo Scientific, Waltham, MA], 1% sodium pyruvate [Life Technologies, Grand Island, NY], 1% L-glutamine [Thermo Scientific, Waltham, MA], and 0.4% β ME [Sigma-Aldrich, St. Louis, MO]).
Brains and spinal cords were passed through 100μm mesh screens and washed as above. Cells were resuspended in 80 % Percoll (GE Healthcare, Pittsburgh, PA) then overlaid with 40 % Percoll to establish a density gradient and centrifuged at 1,600 rpm for 30min following a method previously described (Campanella et al., 2002 (link)). Leukocytes were collected from the resultant interface, counted, and resuspended in stimulation media for assay.
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6

Isolation and Purification of Murine Leukocytes

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LNs were removed from euthanized animals under sterile conditions and single cell suspensions of leukocytes were prepared by disaggregation of the tissue through a 100μm nylon mesh (BD Falcon, Bedford, MA). Cells were washed once with RPMI 1640 supplemented with 10% heat-inactivated FBS (hiFBS; Thermo Scientific, Waltham, MA). Cells were enumerated at a 1:1 dilution with 0.2% trypan blue stain (Life Technologies, Grand Island, NY) using a Cellometer Auto T4 Cell Viability Counter (Nexcelom, Lawrence, MA), washed, and resuspended at 107 cells/mL in stimulation medium (RPMI 1640 containing 10% FBS [Thermo Scientific, Waltham, MA], 1% sodium pyruvate [Life Technologies, Grand Island, NY], 1% L-glutamine [Thermo Scientific, Waltham, MA], and 0.4% β-ME [Sigma-Aldrich, St. Louis, MO]).
Spinal cords were passed through 100μm mesh screens and washed as above. Cells were resuspended in 80% Percoll (GE Healthcare, Pittsburgh, PA) then overlaid with 40% Percoll to establish a density gradient and centrifuged at 300 g for 30min following a previously described method(Campanella et al., 2002 (link)). Leukocytes were collected from the resultant interface, counted, and resuspended in stimulation medium for assay.
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7

Isolation of Leukocytes from Mouse Spleen and CNS

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Immediately prior to transcardial perfusion with Roswell Park Memorial Institute (RPMI, Corning Cellgro, Manassas, VA) 1640, spleens were removed from animals under sterile conditions and single cell suspensions of leukocytes were prepared by disaggregation of the tissue through a 100µm nylon mesh (BD Falcon, Bedford, MA). Cells were washed once with RPMI 1640 supplemented with 10% heat-inactivated FBS (FBS; Thermo Scientific, Waltham, MA), then incubated with RBC Lysis Buffer (eBioscience) for 1 min to remove red cells, and washed in RPMI 1640+FBS. Cells were enumerated in a 1:1 dilution with 0.2% trypan blue stain (Life Technologies, Grand Island, NY) using a Cellometer Auto T4 Cell Viability Counter (Nexcelom, Lawrence, MA), washed, and resuspended at 107 cells/mL in stimulation medium (RPMI 1640) containing 10% FBS, 1% sodium pyruvate (Life Technologies), 1% L-glutamine (Thermo Scientific), and 0.4% β-mercaptoethanol (ME)(Sigma-Aldrich)).
Brains and spinal cords were passed through 100µm mesh screens and washed as above. Cells were resuspended in 80% Percoll (GE Healthcare, Pittsburgh, PA) then overlaid with 40% Percoll to establish a density gradient and centrifuged at 1,600 rpm for 30min following a method previously described (Campanella et al. 2002 ). Leukocytes were collected from the resultant interface, counted, and resuspended in stimulation media for assay.
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8

Isolation of Spleen and Spinal Cord Leukocytes

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Spleens were removed from euthanized animals under sterile conditions and single cell suspensions of leukocytes were prepared by disaggregation of the tissue through a 100 μm nylon mesh (BD Falcon, Bedford, MA). Cells were washed once with RPMI 1640 supplemented with 10% heat-inactivated FBS (hiFBS; Thermo Scientific, Waltham, MA), then incubated with RBC Lysis Buffer (eBioscience, Inc., San Diego, CA) for 1 min to remove red cells, then washed in RPMI 1640 + hiFBS. Cells were enumerated at a 1:1 dilution with 0.2% trypan blue stain (Life Technologies, Grand Island, NY) using a Cellometer Auto T4 Cell Viability Counter (Nexcelom, Lawrence, MA), washed, and resuspended at 107 cells/ml in stimulation medium (RPMI 1640 containing 10% FBS [Thermo Scientific, Waltham, MA], 1% sodium pyruvate [Life Technologies, Grand Island, NY], 1% L-glutamine [Thermo Scientific, Waltham, MA], and 0.4% β-ME [Sigma-Aldrich, St. Louis, MO]).
Spinal cords were passed through 100 μm mesh screens and washed as above. Cells were resuspended in 80% Percoll (GE Healthcare, Pittsburgh, PA) then overlaid with 40% Percoll to establish a density gradient and centrifuged at 1600 rpm for 30 min following a previously described method (Campanella et al., 2002 (link)). Leukocytes were collected from the resultant interface, counted, and resuspended in stimulation medium for assay.
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9

Leukocyte Isolation from Murine Tissues

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Spleens were removed from euthanized animals under sterile conditions and single cell suspensions of leukocytes were prepared by disaggregation of the tissue through a 100µm nylon mesh (BD Falcon, Bedford, MA). Cells were washed once with RPMI 1640 supplemented with 10% heat-inactivated FBS (hiFBS; Thermo Scientific, Waltham, MA), then incubated with RBC Lysis Buffer (eBioscience, Inc., San Diego, CA) for 1 min to remove red cells, then washed in RPMI 1640+hiFBS. Cells were enumerated in a 1:1 dilution with 0.2% trypan blue stain (Life Technologies, Grand Island, NY) using a Cellometer Auto T4 Cell Viability Counter (Nexcelom, Lawrence, MA), washed, and resuspended at 107 cells/mL in stimulation medium (RPMI 1640 containing 10% FBS (Thermo Scientific, Waltham, MA), 1% sodium pyruvate (Life Technologies, Grand Island, NY), 1% L-glutamine [Thermo Scientific, Waltham, MA], and 0.4% β ME (Sigma-Aldrich, St. Louis, MO).
Brains and spinal cords were passed through 100µm mesh screens and washed as above. Cells were resuspended in 80 % Percoll (GE Healthcare, Pittsburgh, PA) then overlaid with 40 % Percoll to establish a density gradient and centrifuged at 1,600 rpm for 30min following a method previously described (Campanella et al., 2002 ). Leukocytes were collected from the resultant interface, counted, and resuspended in stimulation media for assay.
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