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21 protocols using sk mel 3

1

Culturing Melanoma Cell Lines and Melanocytes

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Human melanoma cell line A375 (malignant, CRL-1619), G361 (malignant, CRL-1424), A2058 (metastatic, CRL-11147), SK-MEL-3 (metastatic, HTB-69), normal human primary epidermal melanocytes (PCS-200-013) were all purchased from American Type Culture Collection (ATCC). A375, A2058 cell lines were cultured in DMEM (ATCC) supplemented with 10% fetal bovine serum (FBS, Gibco). G361, SK-MEL-3 cell lines were cultured in McCoy's 5A (ATCC) supplemented with 10% and 15% fetal bovine serum (FBS, Gibco), respectively. Normal human primary epidermal melanocytes were grown in dermal cell basal media (ATCC, PCS-200-030) supplemented with adult melanocyte growth kit (ATCC, PCS-200-042) components. All cells were grown in a humidified incubator at 37°C, 5% CO2 atmosphere. After 1-2 days, cells were chosen to perform calcium imaging or other functional experiments.
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2

Cell Culture Protocol for Cancer Cell Lines

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MDA-MB-231 (ATCC HTB-26), MCF-7 (ATCC HTB-22), B16-F10 (ATCC CRL-6475), 4T1 (ATCC CRL-2539), and RPMI-7951 (ATCC HTB-66) cells were cultured in high-glucose DMEM supplemented with 2 mM L-glutamine, 1 × penicillin-streptomycin-neomycin (PSN) (Gibco, Thermo Fisher Scientific, Waltham, MA, USA), and 10% heat-inactivated fetal calf serum (FCS). SK-MEL-3 (ATCC HTB-69) cells were cultured in complete McCoy’s 5a medium supplemented with 2 mM L-glutamine, 1 × PSN, and 15% heat-inactivated FCS. The human Jurkat T-cell line (clone E6-1, ATCC TIB-152) was cultured in complete RPMI medium (Gibco) supplemented with heat-inactivated 10% FCS, 2 mM L-glutamine, 1 × PSN, and 10 mM HEPES (Gibco).
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Establishment and Authentication of Melanoma Cell Lines

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WM115, RPMI7951, SKMEL24, WM793, SKMEL28, SKMEL5, A375, SKMEL3, and MALM3M human melanoma cell lines were purchased from ATCC. 501MEL and WM9 cell lines were kindly provided by Dr Robert Ballotti and M4BE cell line by Dr Thibault Voeltzel (Centre Léon Bérard). All these BRAFV600 human melanoma cell lines were cultured in DMEM complemented with 10% FBS (Cambrex) and 100 U/ml penicillin–streptomycin (Invitrogen). In order to authenticate the cell lines, the expected major genetic alterations were verified by NGS sequencing. The absence of mycoplasma contamination was checked every 3 weeks with the MycoAlert detection kit (Lonza). Patient‐derived short‐term cultures (< 10) were established from BRAFV600 metastatic melanomas, before treatment for GLO and C‐09.10, or after acquisition of resistance to vemurafenib for ESP and GOKA. C‐09.10 were kindly provided by Dr Robert Ballotti (Nice). These short‐term cell cultures were grown in RPMI complemented with 10% FBS and 100 U/ml penicillin–streptomycin. PLX4032/vemurafenib and GDC0973/cobimetinib were purchased from Selleck Chemicals (Houston, TX, USA) and reconstituted in DMSO. Generation of A375‐R and SKMEL5‐R resistant models was performed by treating cells chronically with increasing doses of PLX4032 for 2–3 months. All BRAFi‐resistant cell lines were permanently cultured in the presence of 3 μM PLX4032.
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Cytotoxicity Evaluation of Z1, Z2, and Z3 Extracts

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The cytotoxicity of Z1, Z2 and Z3 extracts was established by Neutral Red Uptake Test, as described by Repetto et al. [75 (link)] using human immortalized keratinocytes HaCaT (CLS Cell Lines Service GmbH, Eppelheim, Germany) [76 (link)], murine melanoma B16F10 (ATCC CRL-6475) and human melanoma A375 (ATCC CRL-1619) and SK-MEL3 (ATCC HTB-69) (LGC Standards, Łomianki, Poland). All cell lines were maintained in Dulbecco’s modified Eagle’s medium (DMEM)/high glucose supplemented with 10% fetal bovine serum (FBS, Pan Biotech, Aidenbach, Germany) at 37 °C in a humidified atmosphere with 5% CO2. For the experiments 3000 cells were plated per well onto a 96-well plate and grown overnight. Then, the cells were treated with various concentrations of Z1, Z2, or Z3 extracts (12.5–200 µg/mL) or an equal volume of the solvent control. Following 48 h of culture, the cells were incubated for 3 h in DMEM containing 1% FBS and 33 µg/mL neutral red, following by washing in PBS and lysis using acidified ethanol solution (50% v/v ethanol, 1% v/v acetic acid). The absorbance of the released neutral red was measured using FilterMax F5 microplate reader (Molecular Devices, San Jose, CA, USA) at λ= 540 nm. The mean measurement value for the lysate from control cells was set as 100% cellular viability and used to calculate the percentage of viable cells following extracts treatment.
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5

Metastatic and Primary Melanoma Cell Lines

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The metastatic melanoma cancer cells (ATCC TCP-1014) and the primary melanoma cancer cells (ATCC TCP-1013) were purchased from ATCC. The three metastatic cell lines include RPMI-7951 (ATCC HTB-66, named “7951” hereafter), SH-4 (ATCC CRL-7724, named “SH4”), and SK-MEL-3 (ATCC HTB-69, named “HTB69”). The three primary cell lines include SK-MEL-1 (ATCC HTB-67, named “SK”), A375 (ATCC CRL-1619, named “A375”), and G-361 (ATCC CRL-1424, named “G361”). The routine cell culture protocol was detailed previously10 . In brief, cells were cultured in 5% CO2 and 37° in either DMEM (#10564011, for 7951, HTB69, A375 and G361 cells) or RPMI Medium (#72400047, for SH4 and SK cells) supplemented with 10% FBS (Sigma Aldrich), together with a penicillin/streptomycin solution (Gibco). Cells were harvested at 80% confluence for mRNA and protein extractions.
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6

Melanoma Cell Culture and Validation

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HFF were purchased from ATCC (ATCC SCRC-1041). Three melanoma cell lines, Sk-mel-28 (ATCC HTB-72), Sk-mel-3 (ATCC HTB-69) and A375 (ATCC CRL-1619) were purchased from ATCC. All cell lines were cultured in DMEM (Gibco, 41966-029) supplemented with 10% FCS (Sigma Aldrich, F7524), 1× Glutamax (Gibco, 35050061), 100 U/ml penicillin and streptomycin (Gibco, 15140122) and 1 mM sodium pyruvate (Gibco, 11360070). Cells lines were cultured at 37 °C in 5% CO2 with medium replaced as required. Cell lines were tested every fortnight for mycoplasma using LookOut Mycoplasma PCR Detection Kit (Sigma Aldrich, MP0035). Cell line identity was confirmed using STR profiling.
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7

Human Melanocyte and Melanoma Cell Lines

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The experiments were performed in accordance with the Declaration of Helsinki guidelines. The study was approved by the Clinical Research Ethics Board of the University of British Columbia (Certificate H12-02653). With informed consent, biopsies were obtained and stored in RNAlater solution (Life Labs) as previously described [23 (link), 31 (link)] [32 (link)]. Biopsy tissues were archived and stored in −20°C in RNAlater solution (Invitrogen, Canada). Human epidermal melanocytes were purchased from ScienCell (Carlsbad, USA) and cultured in melanocyte medium (2201, ScienCell, Carlsbad, USA). Melanoma cell lines A375, RPMI 7951, SH4, WM-115, SK-MEL-1, SK-MEL-3, SK-MEL-24 were purchased from ATCC (Manassas, USA). Cells were cultured in growth medium as Dulbecco's modified Eagle's medium (DMEM) (Hyclone, Logan, USA) supplemented with 10% fetal bovine serum (Hyclone, Logan, USA) and 1X Antibiotic-Antimycotic (15240062, Gibco, Burlington, Canada) at 37°C in 5% CO2 humidified atmosphere.
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8

Characterization of Melanoma Cell Lines

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Melanoma cell lines SK‐MEL‐3, SK‐MEL‐5, SK‐MEL‐28, Malme 3M and MeWo were purchased from ATCC and were grown using EMEM complete medium with non‐essential amino acids and pyruvate, or RPMI1640 medium (for Malme 3M). 501mel cells were generously provided by Dr. R. Halaban (Yale University) and maintained in RPMI1640 medium. All media were supplemented with 10% FCS and antibiotics. All cell lines harbour mutated BRAF(V600E), with the exception of MeWo cells which are BRAFwt; 293FT cells were purchased from Invitrogen (Carlsbad, CA, USA) and cultivated in DMEM with 10% FCS.
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9

Melanoma and Adjacent Tissue Analysis

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Paired melanoma and adjacent (3 cm around melanoma) non-tumor tissues were obtained from each patient. All tissue samples were subjected to histopathological test. It was shown that all melanoma tissues contained more than 95% cancer cells, and less than 1% of cancer cells were observed in non-tumor tissues. All fresh tissue specimens were frozen at −80°C. Primary neonatal normal human epidermal melanocytes were obtained from Sangon Biotech (Shanghai, China). MM cell lines SK-MEL-3 and A375 (ATCC) were used. DMEM was used to culture the cells in a humidified atmosphere containing 5% CO2 at 37°C. Cells were harvested at confluence of about 85% to perform subsequent experiments.
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10

Cell Viability Assay with Fatty Acids

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Human foreskin fibroblast (Hs27) and human melanoma (A2058, A375, SK-Mel 3) cell lines were purchased (ATCC, Manassas VA). Cells were plated in 48-well plates at a concentration of 7.5×103 cells/well in either DMEM (Hs27, A2058, A375; Invitrogen/GIBCO, Grand Island NY) or McCoy’s 5a Medium (SK-Mel 3; Invitrogen/GIBCO) supplemented with 10% FBS (Invitrogen/GIBCO) and incubated at 37°C in a humid ified atmosphere with 5% CO2. After 24 hours the medium was replaced with either DMEM (Hs27, A2058, A375) or McCoy’s 5a Medium (SK-Mel 3) containing 1% heat inactivated-FBS (Invitrogen/GIBCO) and 0.1% FA-free BSA (Invitrogen/GIBCO) with various concentrations of either DHA (Martek, Columbia MD), GW9508 (Cayman Chemical, Ann Arbor MI) or TAK-875 (Selleck Chemicals, Houston TX) prepared in 4μL of ETOH. DHA was provided at 25-250μM, GW9508 at 25-150μM and TAK-875 at 0-0.4μM. Controls were treated with 4μL of ETOH. All concentrations were tested in quadruplicate.
Following either 144 (DHA) or 72 hours of treatment (GW9508, TAK-875) cells were trypsinized (Trypsin-EDTA; Invitrogen/GIBCO) and viable cells were counted using an absorbance-based cell viability assay (Cell Titer Blue Cell Viability Assay; Promega, Madison WI). During the treatment, medium was changed at 72 hours for the DHA studies. Cell counts are reported as a percent of the control cell count.
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