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3 protocols using sepantronium bromide ym155

1

Investigating Autophagy Regulation in Cells

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All reagents were purchased from Sigma-Aldrich (St Louis, MO, USA), unless indicated. Primary antibodies for p-mTOR (Ser2448), mTOR, p-S6 (Ser235/236), S6, p-Rb(Ser780), Atg5, LC3, Bcl2l1, Bcl2, Beclin-1 and cleaved-poly (ADP-ribose) polymerase (PARP) were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody of LAMP2 were purchase from Proteintech (Chicago, IL, USA), Primary antibody of SQSTM1/p62 were purchase from Novus Biological (Littleton, CO, USA). Cyclin D1 antibody was purchased from Santa Cruz (Santa Cruz, CA, USA). Sepantronium bromide (YM155) was purchased from Selleck (Houston, TX, USA).
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2

Molecular Profiling of Esophageal Cancer Cells

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The esophageal cancer cell lines KYSE410 and KYSE150 were obtained from Dr. Yutaka Shimada at the Hyogo College of Medicine [15 (link)]. Mouse embryonic fibroblasts (MEFs) were obtained from Dr. Zhang, Hongbin at Peking Union Medical College. All cell lines were grown in RPMI supplemented with 10% FBS, 100 U/ml penicillin, and 100 μg/ml streptomycin at 37°C in 5% CO2.
Sepantronium Bromide (YM155) was purchased from Selleck Chemicals (Houston, TX, USA), dissolved in dimethyl sulfoxide (DMSO) to 10 mmol/L stock solutions, and diluted with culture medium. MitoTracker Red CMXRos was purchased from Invitrogen (Life Technologies, USA) and 2, 7-dichlorofluorescein diacetate (H2DCF-DA) and 40, 6-diamidino-2-phenylindole (DAPI) from Sigma-Aldrich (St. Louis, Missouri, USA). Anti-caspase-3 and anti-caspase-9 antibodies were purchased from Enzo (Life Sciences, NY); γH2AX, Survivin, XIAP, mTOR, AKT, Phospho-AKT, ERK, Phospho-ERK, Phospho-S6, 4EBP1, Phospho-4EBP1, LC3, Beclin and Survivin antibodies were purchased from Cell Signaling Technology Inc. (Danvers, MA, USA); Apoptosis-inducing factor (AIF) antibody from Santa Cruz Biotechnology, (Santa Cruz, CA, USA); SLC35F2 antibody from Abcam (Cambridge, MA, USA); PAR and PARP antibodies from BD Pharmingen (BD Biosciences, San Jose, CA); and β-actin antibody from Sigma-Aldrich (St. Louis, Missouri, USA).
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3

Survivin and Histone H2A.X Protein Analysis

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For total protein analysis, cells were resuspended in a lysis buffer. Aliquots of protein extracts were separated on 15% SDS-PAGE and electroblotted onto 0.45 mm Hybond ECL nitrocellulose membranes (Amersham Biosciences, Little Chalfont, UK). The membranes were incubated with the survivin antibody (sc-10811; Santa Cruz Biotechnology, Santa Cruz, CA) or with the Phospho-Histone H2A.X antibody (#9718; Cell Signaling Technology, Danvers, MA). Blots were developed using horseradish peroxidase-conjugated secondary antibodies (Dako, Vienna, Austria) and the SuperSignal 1 West Pico Chemoluminescent Substrate (Thermo Scientific, Rockford, IL), in accordance with the manufacturers' protocol.
Cell Proliferation Assay 1 Â 10 4 MUG-Chor1 or U-CH1 cells were seeded overnight in 96-well microtiter plates (Brand, Voerde-Friedrichsfeld, Germany) and incubated with 0-5 mM Sepantronium bromide (YM155; Selleckchem, Houston, TX) for 24 and 48 h. The CellTiter96 1 AQ ueous Assay (Promega) was performed according to the manufacturer's instructions.
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