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HEK293T cells are a widely used human embryonic kidney cell line. They are derived from human embryonic kidney cells transformed with sheared adenovirus 5 DNA. HEK293T cells are commonly used for a variety of applications, including gene expression, viral production, and cell-based assays.

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3 066 protocols using hek293t cell

1

Silencing and Overexpressing Assays for TIPE2 and p47phox

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For silencing assays, HEK293T cells (ATCC) were transfected with mouse Tipe2 siRNA, mouse p47phox shRNA, human Tipe2 shRNA, and scrambled control siRNA or shRNA plasmids (all sequences shown in Table S1) with pLKO.1-TRC lentiviral packaging constructs (Addgene) using Lipofectamine 3000 (Life Technology), according to the manufacturer’s instructions. The virus supernatants were harvested 48 h after transfection, filtered, concentrated by ultracentrifugation, and titrated by limiting dilution assay using HEK293T cells. BM-MDSCs were infected by mouse Tipe2 siRNA or mouse p47phox shRNA lentivirus for 48 h, and cells were collected to measure TIPE2 and p47phox knockdown efficiency by immunoblotting. MDSCs from PBMC cultures were infected with human Tipe2 shRNA lentivirus for 48 h, and cells were collected to measure human TIPE2 knockdown efficiency by immunoblotting. For overexpressing assays, HEK293T cells (ATCC) were transfected with mouse LAP, mouse LIP, and control vector plasmids (all sequences shown in Table S1) with pLVX-IRES-ZsGreen1 lentiviral packaging constructs (Clontech, Takara) for 48 h, and cells were collected to measure LAP or LIP overexpression efficiency by immunoblotting.
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2

Maintaining Authenticated HEK293T Cell Line

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HEK293T cells (ATCC) were maintained in DMEM (high glucose, L-glutamine, phenol red, sodium pyruvate; obtained from Gibco or Hyclone) supplemented with 10% fetal bovine serum (FBS, Gibco/Life Technologies, Qualified US origin) and 1% penecillin/streptomycin (P/S, Gibco/Life Technologies). As HEK293T cells are listed in the database of commonly misidentified cell lines maintained by ICLAC (http://iclac.org/databases/cross-contaminations/), we obtained fresh cells from ATCC, which were frozen down at an early passage (passage 5) in individual aliquots. The cells were then used for less than 25 passages for all experiments. Multiple biological replicates were performed with cells from different passages and freshly thawed aliquots. There was no testing for mycoplasma infection or further authentification because early passage cells were used for all experiments.
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3

Rhinolophus ACE2 Allele-Mediated SARS-CoV-2 Entry

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For wildtype PRD-0038 S VSV entry into HEK293T cells transfected with R. affinis, R. sinicus, R. landeri, and R. alcyone alleles full-length ACE2 alleles (Figure 1D), HEK293T cells (ATCC) were cultured in 10% FBS, 1% penicillin–streptomycin DMEM at 37 °C in a humidified 5% CO2 incubator. Cells were plated 18–24 hours prior to transfection into 96-well plates [3610] (Corning) coated with poly-lysine [P4707] (Sigma). All transfections were performed using full-length Rhinolophus ACE2 placed into a HDM plasmid (synthesized by GenScript). Transfection of ACE2 alleles into HEK293T cells was performed using 0.2 µg DNA and 0.15 µL Lipofectamine 2000 (Life Technologies) per well in Opti-MEM. After a 5 h incubation at 37 °C in a humidified 8% CO2 incubator, DMEM was added to obtain a final concentration of 10% FBS and 1% penicillin–streptomycin. Cells were incubated at 37 °C in a humidified 8% CO2 incubator for 36–48 h prior to infection. For each infection test, 2–3 technical replicates were performed, and the assays were repeated on a second day, for a total of 4–6 technical replicates. Three biological replicates (pseudovirus generated on different days) were used for cell entry and each point shown represents the mean fold change for each biological replicate. Results were plotted using Graphpad Prism (Figure 1D). Genbank accession numbers for all ACE2s can be found in Table S1.
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4

Protein Expression and Functional Assays

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Two eukaryotic cell lines, Spodoptera frugiperda (Sf9, Expression systems) cells and HEK293T cells (ATCC), were used in this study. Sf9 cells suspension in ESF-921 medium were purchased from Expression systems and used for protein expression of HTR2B for structural study. Sf9 cells were grown in ESF-921 medium at 27°C, 120 rpm without further validation. HEK293T cells were purchased from the American Type Culture Collection (ATCC, CRL-11268) and used for Gq and β-arrestin-1 recruitment assay in this study. HEK293T cells were grown in a humidified 37°C incubator with 5% CO2 using DMEM medium (VWR, #45000) supplemented with 10% (v/v) fetal bovine serum (FBS, VWR, #89510–186) and 100 I.U./mL penicillin and 100 mg/mL streptomycin. Before cell plating, the DMEM medium were changed from 10% FBS to 1% (v/v) dFBS to remove serotonin. HEK293T cells were authenticated by the supplier (ATCC) using morphology, growth characteristics and STR profiling.
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5

Cultivation of HEK293T and H1 Cells

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A human HEK293T stable cell line expressing the traffic light reporter system was kindly provided by Wen Xue’s lab in the RNA Therapeutics Institute at UMass Medical School. The original HEK293T cells were obtained from ATCC. These cells were cultured in Dulbecco-modified Eagle’s minimum essential medium (DMEM; Life Technologies). DMEM was also supplemented with 10% fetal bovine serum (FBS; Sigma). HEK293T cells were obtained from ATCC and cultured in the same conditions. H1 human embryonic stem cells were obtained from WiCell and cultured using feeder-free mTeSR medium (STEMCELL). Cells were grown in a humidified 37 °C, 5% CO2 incubator.
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6

Profiling RNA Expression in Blood Mononucleocytes

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For misincorporation mapping, an ultra-deep RNA-seq dataset that profiled RNA expression in blood mononucleocytes was used12 (link). For m1A-miCLIP, HEK293T cells (passage 5–10, ATCC CRL-3216) or whole mouse brain (16 week age, pooled male and female brain, C57BL/6) was used. HEK293T cells were purchased directly from ATCC but not further validated for identity or tested for mycoplasma contamination. Experiments involving the use of animals were approved by the Institutional Animal Care and Use Committee at Weill Cornell Medicine.
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7

Conditional gene expression in HEK293T cells

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HEK293T cells (American Type Culture Collection) and HEK293T cell-derived clone HEK.EGFPTetO.KRAB were cultured as indicated elsewhere (22 (link)). HER.TLRTetO.KRAB cells and their control TetO-negative counterparts HER.TLRKRAB cells were maintained in DMEM supplemented with 10% fetal bovine serum (FBS), 10 mM MgCl2 and hygromycin B (ThermoFisher Scientific) at a final concentration of 45 μg/ml. These cells were stably transfected with a tTR-KRAB expression plasmid based on the pcDNA3.1/Hygro(+) backbone (Life Technologies). The various cell types were kept at 37°C in a humidified-air 10% CO2 atmosphere.
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8

Pseudotyped IBV Spike Protein Assay

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IBV pseudovirus entry assay was carried out as previously described [46 (link)]. Briefly, full-length IBV spike gene was inserted into pcDNA3.1 (+) plasmid. Retroviruses pseudotyped with IBV spike and expressing a luciferase reporter gene were prepared through co-transfecting HEK293T cells (source: American Type Culture Collection) with a plasmid carrying Env-defective, luciferase-expressing HIV-1 genome (pNL4-3.luc.RE) and the plasmid encoding IBV spike. The produced IBV pseudoviruses were harvested 72 hours post transfection, and then used to enter DF-1 cells (source: American Type Culture Collection) and HEK293T cells. After incubation for 5 hours at 37°C, the medium was changed and cells were incubated for an additional 60 hours. Cells were then washed with PBS and lysed. Aliquots of cell lysates were transferred to Optiplate-96 (PerkinElmer), followed by addition of luciferase substrate. Relative light units (RLUs) were measured using EnSpire plate reader (PerkinElmer). All the measurements were carried out in quadruplicates.
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9

Culturing Breast Cancer and HEK293T Cells

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Human breast cancer cell lines (MDA-MB-231, MCF7 and BT549) and HEK293T cells were purchased from American Type Culture Collection (ATCC, Manassas) and HEK293T cell lines were cultured in DMEM, and BT549 cells were maintained with RPMI-1640 medium. The culture medium was supplemented with 10% fetal bovine serum (FBS, BI). These cells were incubated in a humidified incubator containing 5% CO2 at 37 °C. The cells were cytogenetic tested and identified before freezing.
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10

Culturing MRC-5 and HEK293T Cells

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The MRC-5 cells (Cat# CCL-171, ATCC) and HEK293T cells (Cat# CRL-3216, ATCC) were cultured in DMEM with GlutaMAX (Cat#10569010, Life Technologies) in 10% FBS (Cat#F0926, Sigma) at 37 °C and 5% CO2 in a humidified incubator.
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