eggs were collected
immediately after spawning and placed in groups of approximately 100
per Petri dish within a light- and temperature-controlled incubator.
Embryos (100 per time point) were collected at 2, 10, and 24 hpf and
stored at −20 °C. Nuclear proteins were extracted from
whole embryo pools using an EpiQuik Nuclear Extraction Kit (Epigentek
Group, Farmingdale, NY). Nuclear extract was kept on ice and immediately
quantified using a BCA Protein Assay (Pierce Biotechnology, Rockford,
IL) following the manufacturer’s instructions. Optical density
of the colorimetric reaction was quantified using a VICTOR X3Multilabel
Plate Reader (PerkinElmer, Waltham, MA), and total protein was quantified
using a standard curve generated from bovine serum albumin.
DNMT inhibition was quantified using an EpiQuik DNMT Activity/Inhibition
Assay Ultra Fluorometric Kit (Epigentek Group, Farmingdale, NY). DNMT
inhibition within nuclear extracts (6.5 μg of protein per reaction)
derived from 2-, 10-, and 24-hpf embryos was quantified in the presence
of vehicle (0.1% dimethyl sulfoxide, DMSO), 250 μM 5-azaC, or
TDCIPP (63, 125, 250, or 500 μM). All reactions were conducted
in triplicate. Fluorescence was measured by a VICTOR X3Multilabel
Plate Reader (PerkinElmer, Waltham, MA) and data were corrected for
background and reported as relative fluorescent units.