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126 protocols using fast green fcf

1

Cryosectioning and Oil Red O Staining

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Unfixed tissues from mice and hamsters were immediately embedded in optimal cutting temperature compound (Sakura Fine-Tek®) and maintained frozen in −80˚C. Frozen sections (5 μm thickness) were cut using a cryostat (CM1950, Leica), collected on glass slides, and stained for neutral lipid deposits using Oil Red O (Matheson Coleman & Bell). For staining, slides were first fixed with 4% formaldehyde during thaw for 60 minutes at room temperature, and then washed with deionized water to remove mounting compound. Sections were then immersed in Oil Red O dissolved in 60% isopropyl alcohol and incubated for 30 minutes at room temperature. This was followed by washing with deionized water, counterstaining using Fast Green FCF (Millipore Sigma) and mounting with a coverslip using glycerol. Slides were viewed using a light microscope (Leica DM750 LED) and images were acquired using a high definition color camera (Leica ICC50W).
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2

Histological Preparation of Spider Mites

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Spider mite adult females were collected and fixed overnight at 4°C in 4% formaldehyde in 10 mM phosphate buffer saline (PBS), pH 7.4 with 1% (v/v) Triton X-100. Mites were washed twice in 10 mM PBS and were subsequently dehydrated in an ethanol series (10%, 30%; 50% and 70%; v/v in H2O). Further dehydration and paraffin embedding were performed in tissue processor (Leica ASP300TP). Embedded mites were sectioned on a microtome (Leica RM2255 Microtome) at a thickness of 5 μm. Sections were dewaxed in two 10 min changes of 100% xylene and were progressively rehydrated. The following histological dyes were used as general staining: 0.1% Safranin O (C.I. 50240; MilliporeSigma) and 0.05% Fast Green (FCF, C.I. 42053, MilliporeSigma), 1% hematoxylin (C.I. 75290, MilliporeSigma) solution and 1% eosin (C.I. 45400, MilliporeSigma), and Movats' pentachrome solution. Images were obtained using a Zeiss AxioCam Color HRc CCD Camera 412-312 and Zeiss Axioplan II microscope. Finally, 300 nM of DAPI (D1306, Invitrogen) mixed in 10 mM PBS was used to visualize nuclei under epifluorescence Zeiss Axioplan II microscope.
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3

Histological Analysis of Cartilage Tissue

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Fabricated cell sheets were fixed with 4% paraformaldehyde for 30 min at RT. Harvested rat knee tissue was fixed in 4% paraformaldehyde for four days and decalcified in RapidCal Immuno (BBC Biochemical, Mount Vernon, USA) for one day at RT. Samples were embedded in paraffin blocks and then cut into 5-µm transverse sections with a microtome. Slides were deparaffinized by baking in an oven at 65 °C and subsequent washes with xylene and ethanol. Sections were hydrated by gradual ethanol replacement by distilled water. Safranin-O was used for metachromatic staining for sulfated glycosaminoglycans. Samples were stained for 5 min with Wiegert’s Iron Hematoxylin (MilliporeSigma), 5 min with 0.5 g/L Fast Green FCF (MilliporeSigma), and 5 min with 0.1% Safranin-O (MilliporeSigma). Images were taken with a BX41 microscope (Olympus, Tokyo, Japan) and AmScope Software (USA).
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4

Histological Analysis of 3D Cell Pellets

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At the end of the differentiation assay, the 3D pellets were washed with PBS, fixed overnight in a 4% formalin solution at 4°C. The next day, the formalin was replaced with PBS and the pellets of each condition were embedded into HistoGel (#HG‐4000‐012, Thermo Fisher Scientific) and transferred into histological cassettes (#81‐0103‐00; Sanowa; Leimen, Germany), where they were dehydrated and processed overnight with the STP 120 Spin Tissue Processor (#813150; Thermo Fisher Scientific). After overnight dehydration, the samples were embedded into paraffin and then cut into histological sections (7 μm thickness). In a next step, the samples were either stained with Alcian blue (1% Alcian blue 8GX; #27221) or Safranin‐O (0.1% Safranin‐O; #1.15948; Merck) including a counter‐stain with Fast green powder (0.02% Fast Green FCF; #1.04022; Merck) diluted in distilled water. Finally, all samples were mounted using a coverslip and with Eukitt (#03989‐100ML; O. Kindler Inc.; Freiburg, Germany).
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5

Histological Analysis of FAZ Samples

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Samples of the FAZs (1 mm length) were fixed in 4% paraformaldehyde with 1% glutaraldehyde at 4 °C for 24 h. Samples were then dehydrated in an ethanol series and embedded in paraffin prior to cutting 10-μm sections. Sections were stained for morphological observation using 1% (w/v) Safranin O (Amresco, Solon, USA) and 1% (w/v) Fast Green FCF (Merck, Overijse, Belgium) (Zou et al., 2011 (link)). Insoluble polysaccharides were visualized by periodic acid–Schiff (PAS) staining (Feder and O’Brien, 1968 ), and cellulose was stained using 0.01% Calcofluor White (Sigma-Aldrich) and the carbohydrate-binding module CBM3a (PlantProbes, Leeds, UK).
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6

Visualizing Oil-Protein Microstructures

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Oil body emulsions were stained to visualise the protein and oil fractions. Nile Red (Sigma Aldrich, 0.01%), was used to label lipids, and Fast Green FCF (Merck 0.01%) was used to bind to structural proteins. Microstructural Imaging Images of the emulsion sample was acquired using CLSM. Samples were mounted on a glass slide and examined using a Zeiss LSM880 Laser Scanning Microscope. A band pass filter between 550-625 nm was selected for the detection of Nile Red when excited at 488nm, while a band pass filter between 640-700 nm for the detection of Fast Green FCF when excited at 633nm. Images were acquired using an x63 oil objective, with argon and HeNe laser, respectively. An overlay of the two channels, to the same area, gave the final image of the network seen in the samples, showing in red the lipid, and in green the protein structural component.
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7

Femoral Morphology Analysis via Micro-CT and Histology

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Femora were isolated and rinsed in 0.9% NaCl solution. X-ray images were acquired and evaluated using a SkyScan1076 (Bruker, Billerica, MA, USA) with the previously reported parameters [6 (link)]. The Bruker software pipeline was used for morphometry data analyses. Femora were reconstructed and spatially aligned, and reference levels were selected at the proximal and distal epiphyses (Supplementary Figure S2). Built-in algorithms were utilized for the determination of morphology parameters of binarized images. Paws were decalcified, dehydrated and embedded into paraffin. Serial sections were generated, rehydrated and stained with Safranin O, Fast Green FCF and hematoxylin (Merck, Darmstadt, Germany).
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8

Mulberry Stalk Tissue Preparation

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Samples of the mulberry stalk (5 mm length) were fixed in 4% paraformaldehyde with 1% glutaraldehyde at 4°C for 24 h. Samples were then dehydrated in an ethanol series and embedded in paraffin prior to cutting 10-μm sections. Sections were stained for morphological observation using 1% (w/v) Safranin O (Amresco, Solon, USA) and 1% (w/v) Fast Green FCF (Merck, Overijse, Belgium) (Zou et al., 2011 (link)). Then, they were observed and photographed under a stereomicroscope (ZEISS, German).
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9

Paraffin Sectioning for Cassava Leaf AZ

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Paraffin sectioning was used to detect the histology of cassava leaf AZ as Zhou et al., (2011) described previously52 (link). Briefly, sections (about 10 μm thick) of the AZs were cut with a microtome (Leica RM2245), and stained with 1% (w/v) safranin O (Amresco) and 1% (w/v) fast green FCF (Merck), examined with a fluorescence microscope (Zeiss AXIO Imager A1), and photographed52 (link).
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10

Quantifying SMN Protein from Tissue

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Protein was harvested from approximately 300 mg of flash-frozen tissue homogenized in RIPA buffer (25 mM Tris-HCl, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, pH 7.5) with Complete mini proteinase inhibitors (Roche). A total of 20−30 μg of protein was separated on 10% Novex Tris-Glycine gels (Invitrogen, Thermo Fisher Scientific) and transferred to PVDF membranes. Total protein stain (30% methanol, 6.7% acetic acid, 0.0005% Fast Green FCF from Merck KGaA) stain was used as a loading control and imaged prior to blocking. After blocking, human SMN protein was probed for using anti-SMN, clone SMN-KH monoclonal IgG1 (Merck Millipore, MABE230), and secondary antibody IRDye 800CW goat anti-mouse IgG (LI-COR Biosciences, 926-32210). Membranes were imaged on Odyssey FC imager and analyzed with Image Studio software (both LI-COR Biosciences).
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