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41 protocols using jnm eca600

1

Comprehensive Analytical Characterization of Compounds

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Specific rotations were measured using a P-2200 digital polarimeter (l = 5 cm; JASCO, Tokyo, Japan). IR spectra were measured using a JASCO FT/IR-4600 typeA spectrometer; ECD spectroscopy was performed using a JASCO J-1500 spectrometer. ESI and high-resolution ESI mass spectra were recorded on a Shimadzu LCMS-IT-TOF instrument. FAB and HRFABMS data were recorded using a JASCO SX-102A mass spectrometer. 1H NMR spectra were recorded on JEOL ECS400 (400 MHz) and JNM-ECA 600 (600 MHz) spectrometers (JEOL). 13C NMR spectroscopy was performed on a JEOL JNM-ECA 600 (150 MHz) spectrometer. 2D-NMR experiments were carried out on a JEOL JNM-ECA 600 (600 MHz) spectrometer (JEOL).
Normal-phase silica-gel column chromatography was performed using silica gel 60 (63–210 μm; Kanto Chemical Co., Tokyo, Japan). Reverse-phase silica-gel column chromatography was performed using C18-OPN gel (140 μm; Nacalai Tesque, Kyoto, Japan). HPLC was performed using an SPD-M10Avp UV-vis detector (Shimadzu, Kyoto, Japan).
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2

Spectroscopic Characterization of Compounds

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The following instruments were used to obtain spectroscopic data: specific rotations, Horiba SEPA-300 digital polarimeter (l = 5 cm); UV spectra, Shimadzu UV-1600 spectrometer; IR spectra, Shimadzu FTIR-8100 spectrometer; FAB-MS and high-resolution MS, JEOL JMS-SX 102A mass spectrometer; ESIMS and HRESIMS, Exactive Plus mass spectrometer (Thermo Fisher Scientific Inc., MA, USA); 1H-NMR spectra, JEOL JNM-ECA600 (600 MHz) and JNM-ESC400 (400 MHz) spectrometers; 13C-NMR spectra, JEOL JNM-ECA600 (150 MHz) and JNM-ESC400 (100 MHz) spectrometers, with tetramethylsilane as an internal standard; HPLC detector, Shimadzu SPD-10Avp UV-VIS detectors; and HPLC column, Cosmosil 5C18-MS-II (Nacalai Tesque Inc.). The following experimental conditions were used for column chromatography (CC): ordinary-phase silica gel CC, silica gel 60N (Kanto Chemical Co., Tokyo, Japan; 63–210 mesh, spherical, neutral), normal-phase thin-layer chromatography (TLC), pre-coated TLC plates with silica gel 60F254 (Merck, Darmstadt, Germany; 0.25 mm), with detection achieved by spraying with 1% Ce(SO4)2–10% aqueous H2SO4, and followed by heating.
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3

Optical and NMR Analysis of Stereoisomers

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Optical rotations were measured on a PerkinElmer 341 automatic polarimeter (PerkinElmer, Inc., Waltham, MA, USA). NMR spectra were obtained on JEOL JNM-ECA600 (600 MHz for 1H) or JEOL JNM-AL300 (300 MHz for 1H) spectrometers (JEOL Ltd, Tokyo, Japan). Chemical shifts are reported in parts per million relative to the internal standards [tetramethylsilane (0.00 ppm) for 1H; CD3OD (49.00 ppm) for 13C]. High performance liquid chromatography (HPLC) was carried out using a Shimadzu LC-10AT VP HPLC system and SPD-10A VP UV detector (Shimadzu Corp., Kyoto, Japan) with CHIRALPAK AD or OD (4.6Φ × 250 mm; Daicel Corporation, Osaka, Japan; detection: UV 254 nm, eluent: n-hexane/ethanol, flow rate: 1.0 ml/min, temperature: 30°C).
Thin layer chromatography was carried out using silica gel plates (Merck 5715, 0.25 mm; Merck KGaA, Darmstadt, Germany). Silica gel flash column chromatography was carried out using a Biotage Isolera One chromatograph (Biotage AB, Uppsala, Sweden) with Biotage SNAP Ultra cartridges (silica gel, 25 μm). Methyl (R)-lactate and benzyl (S)-lactate were purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Both the stereoisomers of 1-(tert-butoxycarbonyl)piperidine-3-carboxylic acid were purchased from Alfa Aesar, A Johnson Matthey Company (Heysham, Lancashire, UK). The outline of synthesis of the S-isomer of CCG-1423 is summarized in Fig 2.
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4

Spectroscopic Analysis of Organic Compounds

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1H-NMR and 13C-NMR spectra were recorded in CDCl3 by using JEOL JNM ECA-600 (JEOL, Tokyo, Japan), JEOL JNM-EX400 (JEOL, Tokyo, Japan). ESI-MS were obtained on a Bruker Daltonics micrOTOF-HS focus spectrometer. Optical rotations were recorded on a HORIBA SEPA-300 polarimeter (Horiba, Kyoto, Japan). IR spectra were measured on a JASCO IR-700 spectrometer (JASCO, Tokyo, Japan).
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5

Spectroscopic Analysis of Organic Compounds

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IR spectra were measured on a JASCO IR-700 spectrophotometer (JASCO, Tokyo, Japan). 1H NMR and 13C NMR spectra were recorded in CDCl3 by using JEOL JNM-ECA600 (JEOL, Tokyo, Japan), JEOL JNM-EX400 (JEOL, Tokyo, Japan), or BRUKER ASX300 spectrometer (Bruker BioSpin, Faellanden, Switzerland), unless otherwise stated. EI-MS were obtained on a JEOL JMS-FABmate spectrometer (JEOL, Tokyo, Japan). FAB-MS were obtained on a JEOL JMS-HX110 spectrometer (JEOL, Tokyo, Japan). ESI-MS were obtained on a JEOL JMS-700TZ (JEOL, Tokyo, Japan) or BRUKER DALTONICS micro TOF-HS focus spectrometer (Bruker Daltonics, Bremen, Germany). Optical rotations were recorded on a HORIBA SEPA-300 polarimeter (Horiba, Kyoto, Japan).
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6

Characterization of Dendrimer Compounds

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The identities of the compounds were confirmed by the following methods. Both 1H-NMR (600 MHz) and 13C-NMR (100 MHz) spectra were recorded using a JEOL JNM-ECA 600 (JEOL Ltd., Tokyo, Japan) (and JNM-ECA 920 (JEOL Ltd., Tokyo, Japan)) spectrometer, respectively. The spectra were measured in CDCl3 solvents at room temperature, DMSO-d6 and D2O solvents at 40 °C and 4,4′-dimethyl-4-silapentane-1-sulfonate (DSS) as an internal standard. MALDI TOF mass spectra were measured by a Bruker Ultraflex III instrument (Bremen, Germany) with a 337 nm nitrogen laser. The dendrimer sample solutions (1 μL, 1 mg/100 μL of MeOH:THF = 1:1) and the matrix solution (1 μL, 2,5-dihydroxybenzoic acid of 2 mg/100 μL MeOH:THF = 1:1) were applied to the 24 × 16 well ground steel MALDI probe (Bruker Daltonics K.K., Yokohama, Japan). The dendrimers sample solution (1 μL, 1 mg/100 μL of 0.1% (v/v) TFA in ACN:H2O = 2:1) and the matrix solution(1 μL, 2,5-dihydroxybenzoic acid of 2 mg/100 μL of 0.1% (v/v)TFA in ACN:H2O = 2:1) were applied to the 24 × 16 well ground steel MALDI probe. The sample was dried by air evaporation and then the nitrogen laser was irradiated to each sample to obtain the corresponding mass spectrum.
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7

Synthesis and Characterization of BRAP

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(4-(Hydroxymethyl)phenyl)boronic acid (1.50 g) and 2-(hydroxymethyl)-2-methylpropane-1,3-diol (1.18 g) were added into 20 mL of dry tetrahydrofuran under nitrogen and the mixture was allowed for at room temperature with mechanical stirring. When the reaction mixture became clear after 24 h of reaction, 0.2 g of Na2SO4 was added. The reaction was allowed for at room temperature overnight and the solvent was evaporated using a rotary evaporator. BRAP was obtained using silica gel chromatography (hexane/ethyl acetate = 70/30). BRAP was characterized using NMR (JNM-ECA600 JEOL, Peabody, MA) and GC-MS (HP6890 Series GC System, Agilent, Agilent Technologies, Willington). 1H NMR (400 MHz, CDCl3): δ 7.7(m, 2 H), 7.3(m, 2 H), 4.6 (m, 2 H, Ar-CH2OH), 3,4 (m, 2 H, CCH2OH), 0.8(m, 3 H, CCH3); 13C NMR (400 MHz, CDCl3): δ 144.5, 144.0, 127.5, 67.0, 64.5, 63.5, 42.0, 16.3; GC-MS (m/z):[M+] calc. for C12O4H17B, 236.066; found 235.141. Elemental Analysis (calc, found for C12O4H17B): C (61.08, 60.60), H (7.25, 7.29).
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8

Spectroscopic and Computational Analysis

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1H NMR (400 MHz and 600 MHz) and 13C NMR (151 MHz) spectra were recorded with a JEOL JNM-ECX 400, a JEOL JNM-ECP 400 and a JEOL JNM-ECA 600 spectrometers by using tetramethylsilane as an internal standard. The HR-MALDI-TOF mass spectra were measured by a Bruker Autoflex II spectrometer using positive ion mode.
UV/Vis absorption spectra were measured with a JASCO UV/Vis/NIR spectrophotometer V-570.
TLC and gravity column chromatography were performed on Art. 5554 (Merck KGaA) plates and silica gel 60N (Kanto Chemical), respectively. All other solvents and chemicals were reagent-grade quality, obtained commercially, and used without further purification. For spectral measurements, spectral-grade solvents were purchased from Nacalai Tesque.
All DFT calculations were performed with a Gaussian 09 program package. The geometries were fully optimized at the Becke's three-parameter hybrid functional combined with the Lee–Yang–Parr correlation functional abbreviated as the B3LYP level of density functional theory. The 6-31G(d) bases set implemented was used for structure optimizations and frequency analyses.
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9

Chromatographic Purification and Spectroscopic Analysis

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Column chromatography was performed with silica gel (Kieselgel 60, 230-400 mesh, Merck, Darmstadt, Germany), and silica gel 60 F254 and RP-18 F254s (Merck) were used for TLC analysis. Medium-pressure liquid chromatography (MPLC) was performed using a Combiflash RF (Teledyne Isco, Lincoln, NE, USA), and semipreparative HPLC was performed on a Shimadzu LC-6 AD (Shimadzu Co., Tokyo, Japan) instrument equipped with a SPD-20A detector using Phenomenex Luna C18 (250 × 21.2 mm, 5 μm, Phenomenex, Torrance, CA, USA), Phenomenex Kinetex C18 (150 × 21.2 mm, 5 μm), Phenomenex Luna C8 (150 × 21.2 mm, 5 μm), and YMC C18 J'sphere ODS H80 (250 × 20 mm, 4 μm, YMC Co., Kyoto, Japan) columns. 1H-, 13C-, and 2D NMR spectroscopic data were measured on a JEOL JNM-ECA600 or JEOL JNM-EX400 instrument (JEOL, Tokyo, Japan) using TMS as a reference. Optical rotation was recorded on a JASCO P-2000 polarimeter (Jasco Co., Tokyo, Japan). UV spectrum was obtained using SpectraMax M2e spectrophotometer (Molecular Devices, Sunnyvale, CA, USA). IR data were acquired using a Spectrum Jas.co FT/IR-4600 spectrometers (Jasco Corp., Tokyo, Japan). HRESIMS data were obtained using a Waters SYNAPT G2-Si HDMS spectrometer (Waters, Milford, MA, USA).
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10

NMR Analysis of Purified Polysaccharides

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1H-NMR spectra of the purified polysaccharides were recorded on a JEOL JNM-ECA600 (600 MHz) spectrometer in the FT mode. Each polysaccharide (∼6 mg) for NMR analysis was dissolved in deuterium oxide (D2O, 99.90% D), and lyophilized three times to replace exchangeable protons with deuterons. Then the lyophilized samples were dissolved in 0.6 ml of D2O and transferred to the NMR tube. The one- and two-dimensional (1D and 2D) NMR experiments were recorded with a relaxation time of 1.5 s at a probe temperature of 30°C. 1D 1H-NMR spectra were recorded with an acquisition time of 1.45 s and many 300 scans. 2D 1H/1H COSY (correlation spectroscopy) and TOCSY (total correlation spectroscopy) spectra were recorded with many 112 and 156 scans, respectively. 2D TOCSY spectra were run with a mixing time of 100 ms. The proton signals were assigned, using the 2D 1H/1H COSY and TOCSY spectra.
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