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104 protocols using ab37150

1

Quantifying MMP-2 and MMP-9 Expression

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To investigate MMP-2 and MMP-9 expression, Western blotting and immunohistochemistry (IHC) were performed on tumor tissue samples collected 12 days after tumor transplantation. Protein expression was analysed using antibodies against MMP-2 (ab37150, 1:500; Abcam, UK), MMP-9 (ab38898, 1:1000; Abcam, UK), and β-actin (1:2000; Abcam, UK). IHC was performed according to the manufacturer’s recommended protocol using rabbit anti-mouse MMP-9 (ab38898; Abcam, UK) and MMP-2 (ab37150; Abcam, UK) antibodies, and the integrated optical density (OD) intensity of IHC staining was quantified as previously reported (43 ).
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2

Quantitative Analysis of Protein Expression

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Western blot was performed according to a previously described method18 (link). GAPDH was used as an internal loading control. Densitometric analysis was performed on western blot images using Image Pro-Plus 6.0 software (Media Cybernetics). The catalog numbers and dilution of the antibodies used (Abcam, Cambridge, MA, USA) are as follows: matrix metalloproteinase (MMP)-2, ab37150, 1:500; MMP-9, ab38898, 1:1000; E-cadherin, ab15148, 1:500; vimentin, ab92547, 1:2500; PDK1, 1:800, ab110025; p-AKT1 (phospho S473), 1:2500, ab194201; p-mTOR (phospho S2448), 1:1000, ab109268; AKT1, 1:1000, ab227100; mTOR, ab2732, 1:2000; and GAPDH, ab9485, 1:2500. Western blot assays were replicated three times.
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3

Immunohistochemical Profiling of DFTD Tumors

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DFTD tissues of diseased animals (328T1 and 463T1) were fixed in 10% neutral buffered formalin and paraffin-embedded. 2 μm FFPE consecutive tumor sections were stained with Hematoxylin (Merck, Darmstadt, Germany) and Eosin G (Carl Roth). For immunohistochemical stainings, heat-mediated antigen retrieval was performed in citrate buffer at pH 6.0 (S1699; Dako, Agilent, Santa Clara, CA, USA), EDTA at pH 8.0 or TE at pH 9.0. Sections were stained with antibodies specific to STAT3 (1:200; pH 6; 9139; Cell Signaling Technology), phospho-STAT3 (S727) monoclonal rabbit (1:80; pH 9; 9134; Cell Signaling Technology); EGFR monoclonal mouse (1:300; 610016; pH 9; BD Biosciences), HER2/ERBB2 monoclonal rabbit (1:200, 4290; Cell Signaling Technology), HER3/ERBB3 monoclonal rabbit (1:200, 12708; Cell Signaling Technology), Periaxin/PRX (1:200, HPA001868, Sigma Aldrich), MMP2 (1:200; ab37150, Abcam), Ki67 (1:1000; NCL-Ki67p; Novocastra, Leica Biosystems;) or Cleaved Caspase 3 (Asp175) (1:200, 9661S, Cell Signaling Technology) using standard protocols (see also Table S1). Images were photographed using an Olympus BX 53 microscope, and were quantified using HistoQuest TM software (TissueGnostics GesmbH, Vienna, Austria).
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Protein Expression Analysis in Tissue Homogenate

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PBS was used to wash fresh tissue which was grounded into a homogenate, and then RIPA buffer was used to lyse them to obtain total protein. Protein concentrations were determined by the BCA assay (Solarbio, PC0020, China). Samples (30 μg protein) were resolved on 8% SDS-PAGE gel and transferred to PVDF at 4°C. Membranes were blocked in fat-free milk combined with TBST for 1 hour at 25°C and immunoblotted with the appropriate diluted primary antibody KIF20A (Abcam, ab104118, UK; 1 : 1000 dilution for Western blot and 1 : 200 dilution for IHC-P), PCNA (Abcam, ab92552, UK; 1 : 1000 dilution for Western blot), Ki67 (Abcam, ab16667, UK; 1 : 1000 dilution for Western blot), MMP2 (Abcam, ab37150, UK; 1 : 500 dilution for Western blot), MMP9 (Abcam, ab76003, UK; 1 : 5000 dilution for Western blot), and GAPDH (SunGene Biotech, KM9002, China; 1 : 5000 dilution for Western blot) at 4°C overnight. Then, membranes were washed 10 minutes three times and incubated with the secondary antibody for 1 hour at 25°C. Finally, the blots were visualized by Imager.
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5

Western Blot Analysis of Protein Biomarkers

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Proteins were electrophoresed on SDS-PAGE gels and transferred onto PVDF membranes. Membranes were blocked with 5% non-fat skim milk and then incubated 4°C overnight with the following primary antibodies: rabbit anti-MMP2 (ab37150, Abcam, 1μg/ml ), rabbit anti-MMP9 (ab76003, Abcam, 1μg/ml ), rabbit anti-C/EBPβ (ab32358, Abcam, 1μg/ml ), rabbit anti-SMAD3 (A7536, Abclonal, 1μg/ml ), rabbit anti-p-SMAD3 (Ser423/425, #9520, CST, 1μg/ml ), rabbit anti-ERK (A11186, Abclonal, 1μg/ml ), rabbit anti-p-ERK (AP0472, Abclonal 1μg/ml ), rabbit anti-PARP (#9532S, CST, 1μg/ml), rabbit anti-cleaved caspase3 (Asp175) (#9664S, CST, 1μg/ml), rabbit anti-IGFBP5 (A13858, Abclonal, 1μg/ml ), rabbit anti-p53 (ab26, Abcam, 1μg/ml ), mouse anti-PUMA: (sc-377015, Santa Cruz, 5μg/ml ), or rabbit anti-β-actin (bs-0061R, Bioss, 0.5μg/ml ). PVDF membranes were washed and then incubated with the corresponding horseradish peroxidase-conjugated secondary antibody (DingGuo, Beijing). Protein bands were developed using Chemiluminescence ECL Plus-Western Blotting detection reagents (Bio-Rad). The intensities of protein bands were quantified with Gel-Pro analyzer software with P-actin served as an internal control prior to statistical analyses.
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6

Immunohistochemical Analysis of Tissue Markers

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Tissue sections were deparaffinized and rehydrated. For antigen retrieval, sections were treated with 20 μg/ml of proteinase K for 3 min and endogenous peroxidase was blocked with 3% H2O2/PBS solution. After blocking with 2% serum, which is from the same species as the secondary antibodies, sections were incubated overnight at 4°C with antibodies against F4/80 (Clone A3-1, AbD serotec), MMP2 (ab37150, abcam), or MMP14 (ab53712, abcam). After washing with PBS, sections were incubated with appropriate biotinylated secondary antibodies (Vector Labratories) for 60 min at room temperature and treated with Vectastain elite ABC kit (Vector Laboratories). Sections were colored using ImmPACT DAB (Vector Laboratories) and counter stained with Hematoxylin.
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7

Protein Expression and Quantification Protocol

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Tissues and cells were lysed in RIPA lysis buffer, and protein concentrations were determined using the bicinchoninic acid method. Totally, 50 µg of each protein was loaded per lane and separated on SDS-PAGE gels, and then transferred onto polyvinylidene fluoride membranes. After blocking with 5% dry milk for 1 hour at room temperature, primary monoclonal antibodies including NUCB2, mouse anti-β- actin (1:1,000 dilution, ab8226; Abcam), rabbit anti-Ki67 (1:1,000 dilution, ab16667; Abcam), mouse anti-PCNA (1:500 dilution, ab29; Abcam), mouse anti-MMP2 (1:1,000 dilution, ab37150; Abcam), and mouse anti-MMP9 (1:1,000 dilution, ab38898; Abcam) were used. The samples were then incubated with the secondary antibody (polyclonal goat anti- rabbit/mouse, 1:10,000 dilution; Rockland Immunochemicals Inc, Gilbertsville, PA, USA) for 30 minutes at 37°C and detected by chemiluminescence.
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8

Western Blot Analysis of Protein Expression

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Total cell lysate was extracted using radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology). Approximately 30 µg of protein was separated by 10% SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane. After blocking with 5% skimmed milk, the membranes were incubated overnight with primary antibodies against CEP55 (Abcam, ab170414), MMP2 (Abcam, ab37150), MMP9 (Abcam, ab38898), Cyclin D1 (Abcam, ab134175), p-IKKβ (Abcam, ab59195), IKKβ (Abcam, ab32135) and IκBα (Abcam, ab32518), followed by incubation with secondary antibodies. Human α-tubulin (Abcam, ab7291) or GAPDH (Abcam, ab8245) were used as the endogenous references, according to the details. Immunoreactive protein bands were visualised using the ECL method (Invitrogen), according to the manufacturer’s recommendations.
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9

Western Blot Analysis of EMT Markers

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Cells (please see below) were lysed by using lysis buffer for western blotting (P00l3, Beyotime) and loaded onto 10% sodium dodecyl sulphate-polyacrylamide gels and were then transferred onto polyvinylidene difluoride membranes (Millipore). The quantification of total protein was performed using a Pierce BCA Protein Assay kit (Thermo Fisher Scientific), and equal amounts of protein (30 μg) were used for analysis. Blots were blocked with 5% milk/TBST and incubated with primary antibodies (Twist1: 1:500, sc-15393, Santa Cruz Biotechnology; Slug: 1:1,000, 6591, Cell Signaling Technology; Snail: 1:1,000, ab53519, Abcam; Vimentin: 1:1,000, 2707-1, Epitomis; EphA2: 1:500, sc-924, Santa Cruz Biotechnology; VE-cadherin: 1:500, ab33168, Abcam; MMP2: 1:500, ab37150, Abcam; E-cadherin: 1:200, SC-8426, Santa Cruz Biotechnology; p-smad2/3: 1:500, sc-11769, Santa Cruz Biotechnology) at 4°C overnight, followed by incubation with secondary antibodies (goat anti-mouse IgG-HRP and goat anti-rabbit IgG-HRP, 1:2,000; sc-2005 and sc-2030; Santa Cruz Biotechnology) for 2 h at room temperature. Blots were developed using an enhanced chemiluminescence detection kit (Amersham Pharmacia Biotech). For protein loading analyses, p-actin antibody (1:1,000, P30002, Abmart) or GAPDH (1:2,000, ab9485, Abcam) was used.
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10

Protein Expression Analysis by Western Blot

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Cells were lysed with a RIPA buffer (CW2333S, CWbio, China) and a protease inhibitor cocktail set I (539131, Millipore, USA). The cellular proteins' supernatants were collected by centrifugation at 14,000 g for 20 min at 4°C. Protein concentrations were measured with the BCA protein assay kit (CW0014S, CWbio). Equal amounts of proteins were separated by 10% SDS-PAGE (P0014B, CWbio) and were transferred to PVDF membranes (ISEQ00010, Millipore, USA), which were blocked for 1 h with 5% bovine serum albumin (0332, Amresco) and were incubated overnight at 4°C with related primary antibodies, including LDHA (1:1,000, C4B5, Cell Signaling) matrix metalloprotein 2 (MMP2, 1:1,000, ab37150, Abcam), ZO1 (TJP1 tight junction protein 1; 1:1,000, D7D12, Cell Signaling), E-cadherin (1:1,000, 24E10, Cell Signaling), N-cadherin (1:1,000, D4R1H, Cell Signaling), Vimentin (1:1,000, D21H3, Cell Signaling), Slug (1:1,000, C19G7, Cell Signaling), and β-ACTIN (1:1,000, D6A8, Cell Signaling). After probing with secondary antibodies (GK600510">GK600510, Gene Tech, China), the membranes were conjugated to horseradish peroxidase (HRP) in room temperature for 1 h, and the bands were exposed by a chemiluminescent HRP substrate (WBKLS0500, Millipore, USA). The quantitative analysis of Western blots was carried out by Image J (https://imagej.nih.gov/ij/download.html).
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