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Phase contrast microscopy

Manufactured by Olympus
Sourced in Japan, Germany, United States

Phase-contrast microscopy is an optical microscopy technique that enhances the contrast of transparent samples, enabling the visualization of details that would otherwise be difficult to observe. The core function of this technique is to convert phase shifts in the light passing through a specimen into corresponding changes in amplitude, which can then be detected and displayed as an image.

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101 protocols using phase contrast microscopy

1

Fabrication of Hydrogel Optical Fibers

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Platinum-cured silicone tubes (Cole Parmer) with inner diameters of 250–1000 μm were used as a mold for the core. Precursor solution composed of 80% wt vol−1 PEGDA (700 Da; Sigma Aldrich), 5% wt vol−1 2-hydroxy-2-methyl-propiophenone (Sigma Aldrich) in distilled water was injected in the tube through a syringe adapted with a syringe filter with 0.45 μm pore. The PEG hydrogel was formed by photocrosslinking the solution with exposure to UV (365 nm, 5 mW cm−2; Spectroline) for 5 min. The tube with the crosslinked core was immersed in dichloromethane for 30 min, and then the core was isolated from the swollen tube. The core was immersed in distilled water at least for 1 hour to remove unreacted chemicals. To form the clad layer, the core was immersed in alginate solution (2 % wt vol−1; Sigma Aldrich) and then in calcium chloride solution (100 mM; Sigma Aldrich). This procedure was repeated to form a multi-layer clad. Successful fabrication of the core-clad fiber was checked by phase-contrast microscopy (Olympus).
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2

Cell Migration Assay with Nicorandil and Rapamycin

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Cell migration was investigated by wound healing assay. CEMCs (70-80% confluence) were wound with a 1.15mm diameter pipette tip. CMECs were incubated in DMEM containing 1% FBS with nicorandil (100μM) or rapamycin (100ng/ml). After 24 h, scratch photographs were taken by a phase contrast microscopy (Olympus Corporation, Tokyo, Japan). Cell proliferation was assessed by BrdU Cell Proliferation Assay Kit (Cell Signaling Technology, MA, USA) and a modified 3-(4,5-dimethyl-thiazol-2-yl)-2,5-dyphenyltertrazolium bromide assay (MTT, Sigma-Aldrich, St Louis, MO,USA) according to the supplier's instruction.
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3

Wound Healing Assay for UM-UC3 Cells

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After transfection, cells were grown to 100% confluency in six-well plates and cross wounds were made using micropipette tips. Wound healing photograph was obtained after 24 h of culture by phase-contrast microscopy (Olympus). The number of cells were counted directly with photographs. The UM-UC3 cells lack adequate migration ability, thus was not suitable for wound healing assay.
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4

Subcutaneous NS1 Injection Induces CD138 Shedding in Mice

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To further confirm that NS1 induced CD138 shedding in endothelial cells in mice, 50 μg of recombinant NS1, E or prM protein or 50 μl of PBS was subcutaneously injected into 8- to 12-week-old BALB/c mice, followed by a second injection of an equal amount of recombinant proteins or PBS 24 h after the first injection at the same site. The mice were sacrificed 24 h after the second injection. The separated skin tissues were fixed in formalin overnight and embedded in paraffin for the preparation of a series of sections. After paraffin removal and antigen retrieval by citrate buffer, the tissue sections were blocked, and immunohistochemistry was performed using the Mouse/Rabbit HRP Detection System with DAB (brown) (BioTnA Biotech, Kaohsiung, Taiwan). Hematoxylin was used as a counterstain. Anti-α-SMA antibody (Arigo, Hsinchu City, Taiwan) was used at 1:200, and anti-CD138 antibody (BD, Franklin Lakes, NJ) was used at 1:100. The resultant images were acquired using phase-contrast microscopy (Olympus, Tokyo, Japan).
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5

Sphere Formation Assay for Enriched CAF

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FACS-sorted CD44high/CD44low CAF cells (5000 cells/ml) were cultured in ultra-low attachment plates (Corning) in serum-free DMEM-F12 (Life Technologies) containing stem cell culture supplements. After 10 days in culture, spheres >50 μm were counted under phase-contrast microscopy (Olympus), and the size and number of spheroids were calculated from 5 random fields using Image J (images.nih.gov). The number of CD44high spheres >50 μm formed under the sphere culture condition was 8–12 per field, while the number of CD44low spheres formed >50 μm was 0–2 per field. The spheres less than 50 μm were not counted. Three independent experiments were conducted.
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6

Characterization of Bacterial Strains SA29-B and YU21-B

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Macroscopic and microscopic observations were performed to characterize the strains SA29-BT and YU21-B. Both stains were cultured on PSGS gellan gum plates at 30°C for 5 d. This culture period approximately corresponded to the beginning of the stationary growth phase based on colony formation. Motility was examined by phase-contrast microscopy (Olympus). Gram staining was conducted after staining using the Hucker method (Murray et al., 1994 ). Cell morphology, spore formation, and cell size were examined using the field emission scanning electron microscope (FE-SEM) S-4100H (Hitachi High Technologies). The strains cultured at 30°C for 14‍ ‍d, which approximately corresponded to the death phase, were also used to confirm spore formation. In FE-SEM observations, the cells of both strains were washed with 10‍ ‍mM phosphate buffer (pH 7.0) and placed on glass micro covers. After sequential dehydration and freeze-drying, cells were metal-coated with platinum and observed under the high vacuum mode at 10 kV.
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7

Conditioned Media Effect on Angiogenesis

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Passage 3 (P3) MSCs, P10 MSCs, and P10 MSCs (knockdown by c-Cbl LNA Gapmers) were cultured in the EC basal medium containing 0.75% fetal bovine serum (FBS) without growth factors for 24 h. The conditioned culture medium was collected and stored at 4°C for subsequent experiments.
Ninety-six-well plates were coated with 50 µl growth factor reduced Matrigel (Biocoat Incorporation, NY, USA) per well. HUVECs were randomly divided into five groups, which were suspended in different culture medium at the density of 1 × 105/ml, including the positive control group (suspended in EC complete medium), negative control (NC) group (suspended in EC basal medium supplemented with 0.75% FBS alone), P3 group (suspended in P3 conditioned culture medium), P10 group (suspended in P10 conditioned culture medium), P10 + SCR group (suspended in P10 + scramble LNA Gapmers conditioned culture medium), and P10 + c-Cbl KD group (suspended in P10 + c-Cbl LNA Gapmers conditioned culture medium). Each group was added with 100 µl cells per well and incubated at 37°C with 5% CO2. After incubation for 8 h, tube formation was captured with phase-contrast microscopy (Olympus, Tokyo, Japan) and three fields of each picture were randomly selected for further analysis with ImageJ software.
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8

Senescence Assay for Bone Marrow-Derived MSCs

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The senescence of BM-MSCs was determined by using an senescence associated β-galactosidase (SA-β-Gal) staining kit (Beyotime Biotechnology, Shanghai, China) according to the manufacturer’s instructions. Briefly, BM-MSCs that were cultured in a six-well plate were washed with PBS and then fixed in fixative solution for 15 min at room temperature. After that, each well was added with 1 ml staining working solution and maintained at 37°C without CO2 for 12 h. The SA-β-gal-positive senescent MSCs were photographed with phase-contrast microscopy (Olympus) and the percentage was calculated from five randomly chosen fields of each well.
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9

Cell Motility Assay Protocol

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Cell motility was determined by measuring the movement of cells to close an artificial wound. Cells were seeded in 24‐well plates at 80% confluence. Cells were wounded with a 200‐μL pipette tip, washed with PBS, and incubated with medium containing 1% FBS. The distance traveled by cells was monitored by phase‐contrast microscopy (Olympus, Tokyo, Japan) at indicated time points.
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10

Morphological Assessment of Schwann Cells

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SC morphology was assessed by phase contrast microscopy (Olympus, Tokyo, Japan) at 100× magnification. Cells obtained by enzymatic digestion were resuspended in SC culture medium. Most cells adhered to the laminin-coated flasks within 48 hours and had one of two distinct shapes corresponding to two cell types: SCs were small, bipolar or tripolar, and refractile, while fibroblasts had a flat, polygonal shape with an oval nucleus and blunt cytoplasmic processes.
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