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A2576

Manufactured by Merck Group
Sourced in Germany

The A2576 is a laboratory instrument used for analytical purposes. It is designed to perform various analytical tasks, such as sample preparation, separation, and detection. The core function of the A2576 is to facilitate precise and accurate analysis of samples, though its specific intended use is not provided.

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6 protocols using a2576

1

Soft Agar Colony Formation Assay

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After trypsinization, cells were passed 4-5 times through a 21G syringe, before 1 × 10 E4 cells were resuspended in complete medium with 0.3% agarose (A2576, Sigma) and appropriate antibiotics, and subsequently cultured in 15 ml tubes (352059, BD Biosciences) overlaid with medium without agarose. After two weeks, agarose gels were very gently poured into wells of 6-well plates, colonies stained with 2.5 mg/ml MTT (Sigma), scanned, and finally quantified using the Image J software. Cell clusters of at least 50 cells were scored as colonies.
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2

Chromosomal Fluorescent Tagging of E. coli

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E. coli strain MG1655 (MG1655 galK::SYFP2-FRT) was genetically modified to possess a chromosomal SYFP2 gene or chromosomal mTagBFP2 gene and to exhibit blue or yellow fluorescence [24 (link),25 (link)]. Bacteria stock was prepared as described in Supplementary note 1. We employed an autofluorescence-free M9 minimal salt culture medium in all experiments. All materials were sterilized before use. We ultilized the following reagents and materials: D-glucose monohydrate (1083421000, Millipore, Germany), casein hydrolysate (22090, Sigma Aldrich, Germany), magnesium chloride (2008337, Sigma Aldrich, Germany) ultra-low gelling temperature agarose (A2576, Sigma Aldrich, Germany), hydrofluoether (HFE) oil (Novec 7500, IoLiTec Ionic Liquids Technologies GmbH, Germany), surfactant (PicoSurf 2TM 2% (w/w), Dolomite, UK), and mineral oil (M5904, Sigma Aldrich, Germany). The fluidic system was constructed using transparent Fluorinated ethylene propylene (FEP)-tubings, Ethylene tetrafluoroethylene (ETFE) T-junction, and cross-junction, 2-way manual valves (1/16” OD, IDEX Health & Science, USA). The flow rate in the fluidic system was controlled by a 4-dosing units precision pump Nemesys (CETONI, Germany).
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3

Quantifying Anchorage-Independent Cell Growth

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4 × 104 cells were passed 4-5 times through a 21G syringe, resuspended in complete medium with 0.3% agarose (Sigma Aldrich #A2576) and appropriate antibiotics and layered onto a 15 mL tubes (BD Biosciences, #352059) overlaid with medium without agarose. After two weeks, growth media was removed and viable colonies were stained with 2.5 mg / ml iodonitrotetrazolium chloride (Sigma Aldrich #I10406), scanned and finally quantified using the ImageJ software. All these experiments were done in at least 3 replicates.
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4

Fabrication of Agarose Micro-Wall Arrays

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Agarose micro-wall arrays were fabricated on a cell culture surface as previously described [34 ]. Briefly, the surface of the PDMS micro-mold was cleaned with mending tape (MP-18) (Sumitomo 3M, Tokyo). After rinsed with ethanol and deionized water, the PDMS micro-mold was placed on a PLL coated glass bottom dish (D11141H) (Matsunami Glass Ind., Osaka). The mold and dish were placed in a vacuum desiccator connected to a vacuum line and degassed at a gauge pressure of -98 kPa for 1 hour. Immediately after degassing, the mold and dish were removed from the desiccator and 2w/v% agarose aqueous solution (A2576) (Sigma-Aldrich, St. Louis, MO) heated to boiling in a microwave oven was poured into the hole on the PDMS micro-mold by a micro-pipette. It was placed on a plate heater with a surface temperature of 50°C until the agarose solution was guided into the PDMS micro-mold by negative pressure and completely filled the space inside. The mold and dish were then cooled at 4°C for 30 min to induce the gelation of agarose. The gelated agarose was dehydrated in a drying oven (EO-300B) (ASONE) at 70°C for 2 d. Peeling off the PDMS micro-mold, the dehydrated agarose patterns remained on the surface of the glass bottom dish. The surface of micro-wall was monitored with a three-dimensional laser scanning confocal microscope (VK-8710) (Keyence, Osaka).
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5

Fabrication of Heterogeneous Hydrogel Microsprings

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1.5% w/w sodium alginate solution (NaAlg; Wako, 194–13321) and 150 mM calcium chloride solution (CaCl2; Wako, 039–00475) were used during fabrication of hydrogel microsprings, while propylene glycol alginate (PGAlg; Wako, 165–17415) was used as an inner solution during fabrication of tubular microsprings. To produce heterogeneous core-shell hydrogel microsprings, 3% w/w agarose solution (SIGMA-ALDRICH, A2576) with a low melting point, a mixture composed of 5% v/v magnetic fluid (Ferrow Tec, EMG707) and 2.85% w/w NaAlg, and 2% w/w bovine dermal type-I collagen solution (IAC-50, KOKEN) containing HepG2 cells with a concentration of 1.0 × 108 cells/mL were used as core materials. To remove calcium alginate shells, a solution containing 200 μg/mL of alginate lyase (SIGMA, A1603) in phosphate-buffered saline (×10 PBS(−), WAKO, 163–25265, was diluted by sterilized water) was utilized. To form the collagen-core microspring encapsulating HepG2 cells, a solution mixture containing 1.5% w/w NaAlg and 145 mM NaCl (Wako, 191–01665) was used as the shell flow.
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6

Secure Zebrafish Larvae Immobilization for Imaging

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To securely immobilize and precisely position non-anesthetized non-paralyzed zebrafish larvae for extended light-sheet imaging sessions, we devised a process through which larvae can be embedded in a cylinder of 1.3% ultra-low gelling temperature agarose (which solidifies at 25 °C; A2576, Sigma) surrounded by shell of 2% low gelling temperature agarose (which solidifies at 55 °C; A0701, Sigma). The ultra-low gelling temperature core allows larvae to be safely added to the agarose while in a liquid state without being exposed to excessive temperatures. The more rigid low gelling temperature agar shell strengthens and supports the inner core, allowing it to be inserted into the glass capillary and ensuring that the larvae are fully immobilized. Embedding is accomplished by first transferring larvae into a solution of liquid 1.3% ultra-low gelling temperature agarose, which is then poured into a 20 mL syringe. The 20 mL syringe is then inserted into a 60 mL syringe filled with 2 % low gelling temperature agarose. The 20 mL syringe is capped with an 18-gauge stainless steel needle and the 60 mL syringe is capped with a 16-gauge stainless steel needle. We then simultaneously extrude both agarose solutions into a room temperature bath containing E3 medium, allowing the agar to rapidly solidify.
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