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19 protocols using kn 93

1

Biochemical Markers of Neuropathic Pain

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Antibodies against TRPV1 and GAPDH were obtained from Cell Signaling Technology (Boston. USA); PF was purchased from Zeheng corporation (Hangzhou, China); anti-CaMKII was obtained from Abcam (UK); anti-CREB and anti-pCREB were obtained from CST (USA); Evans blue was purchased from Sigma–Aldrich (Saint Louis, MO, USA); and 2,3,5-triphenyltetrazolium chloride (TTC) was purchased from Biosharp (Anhui, China). KN-93 was purchased from Selleck (USA).
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2

Antibody and Chemical Reagents for PRRSV Study

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Primary antibodies were mouse anti-PRRSV N protein (produced in our laboratory), mouse anti-β-actin (Proteintech, #A5316), mouse anti-Flag (Proteintech, #80010-1-RR), rabbit anti-LC3 (Proteintech, #14600-1-AP), rabbit anti-ATG7 (Cell Signaling Technology, #2631), rabbit anti-CaMKII (Abcam, #ab168818), rabbit anti-p-AMPK (Thr172) (Cell Signaling Technology, #2535), rabbit anti-AMPK (Cell Signaling Technology, #2532), rabbit anti-p-mTOR(Ser2448) (Cell Signaling Technology, #5536), rabbit anti-mTOR (Cell Signaling Technology, #2983), rabbit anti-STIM1 (Cell Signaling Technology, #4916), mouse anti-Orai1 (Proteintech, #66223–1), rabbit anti-GRP78 (Proteintech, #11587-1-AP) and rabbit anti-Calnexin (Abcam, #ab92573). HRP-labeled rabbit or mouse secondary antibodies were purchased from Beyotime (China).
Chemicals used included 2-Aminoethyl diphenylborinate (2-APB) (Selleck, #S6657), 3-MA (Selleck, #S2767), 4-Phenylbutyric acid (4-PBA) (Selleck, #S3592), BAPTA-AM (Selleck, #S7534), Dantrolene sodium (Selleck, #S5478), Dorsomorphin (Compound C) 2HCL (Selleck, #S7306), KN-93 (Selleck, #S7423), ML-9 HCL (Selleck, #S6847), Procaine (Selleck, #S4668), Rapamycin (MedChemExpress, #HY-10219), Tetracaine-HCL (Selleck, #S2573), Thapsigargin (Selleck, #S7895), Tunicamycin (Beyotime, #SC0393).
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3

Modulation of Calcium Signaling Pathways

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N,N,N′,N′ -Tetrakis (2-pyridylmethyl) ethylenediamine (TPEN) and thapsigargin (TG) were obtained from Sigma (St. Louis, MO, United States). BAPTA-AM, EGTA-AM, H89, 2APB, and stattic were purchased from MCE (NJ, United States). KN-93 and KN-92 were obtained from Selleck (Houston, TX, United States). Antibodies including anti-p-STAT3, -STAT3, -p-CaMKII, -CaMKII, -GAPDH, and the secondary antibody were obtained from Cell Signaling Technology (Beverly, MA, United States). Anti-IP3R,-p-RyR2 and -SERCA2 were purchased from Abcam (Cambridge, United Kingdom). Anti-RyR2 was purchased from Proteintech Group (Chicago, IL, United States). Anti-ZIP9 was obtained from Biorbyt (Cambridge, United Kingdom). Fluorescence dyes were obtained from Invitrogen (Carlsbad, CA, United States).
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4

Murine CD62L+ CD4+ T Cell Differentiation

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Murine CD62L+CD4+ T cells were isolated using magnetic cell sorting from mouse splenocytes according to the manufacturer’s instruction (Miltenyi Biotec, Charlestown, MA, USA). In total, 3 × 105 cells were cultured in a 48-well plate coated with goat anti-hamster crosslinking antibody in RPMI 1640 medium complemented with penicillin/streptomycin, 10% fetal bovine serum, and ß-mercaptoethanol. To differentiate the cells into Tfh, the medium was supplemented with anti-CD3 (0.25 µg/ml, 145-2C11; BioLegend, San Diego, CA), anti-CD28 (0.5 µg/ml, 37.51; BioXcell, Lebanon, NH), interleukin-21 (50 ng/mL, R&D systems, Minneapolis, MN, USA) interleukin-6 (100 ng/mL, R&D systems), anti-TGFß (0.5 µg/mL, clone 1D11; R&D systems) anti-IFN-gamma (10 µg/ml; BioXcell, Lebanon, NH, USA), and anti-IL-4 (10 µg/ml; BioXcell). The cells were retrieved for analysis on day 3 of the culture.
For the coculture experiment using human Tfh and B cells, 50,000 freshly sorted autologous Tfh and B cells were cocultured at a 1:1 ratio in a 96-well plate with staphylococcal enterotoxin B (SEB, 1 ng/mL, Fisher Scientific) for 7 days at +37 °C. The CaMK4 inhibitor KN93 (Selleckchem, Houston, TX, USA) or its vehicle (dimethysulfoxide, DSMO) was used at the concentration of 10 µM.
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5

Investigating TAZ and CaMKII in HepG2 Cells

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The HepG2 cell line (ATCC, Cat. no #HB-8065™) was purchased from American Type Culture Collection (Manassas, VA, USA). Cells were grown to 70% confluence in DMEM (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% FBS (v) under 37°C/5% CO2. To observe the role of TAZ in cancer cell viability, two independent shRNAs against Taffazin and control shRNA were transfected into HepG2 cells. To explore the role of CaMKII in cancer cell death, KN93 (25 µM, Selleck Chemicals, Houston, TX, USA),18 (link) an inhibitor of CaMKII, was added into the cell medium for 45 minutes.
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6

Cardiac Protein Expression Analysis

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Anti-CaMKIIδ (Item No. sc-100362) was purchased from Santa Cruz (USA), anti-CaMKII (phospho T287) (Item No. ab182647), anti-β Tubulin (Item No. ab6046), anti-cardiac troponin T (Item No. ab209813) were purchased from Abcam (Cambridge, UK), Tropomyosin-1/3 (Item No. D17B8) were purchased from Cell Signaling Technology (Beverly, MA, USA), Anti-MYOM2 (Item No. A20526) was purchased from ABclonal (Wuhan, China). KN-93 and KN-92 were obtained from Selleck (Houston, TX, United States).
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7

Dissecting PKA and CaMKII Signaling in Cardiomyocytes

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H-89 and KN-93 (1 μmol/L; Selleck), specific inhibitors for PKA and CaMKII, respectively, were used to investigate PKA/Ser16-PLB, and CaMKII/Thr17-PLB signaling pathways mediated the effect of OPD. Cells were treated with the abovementioned medium containing H-89 and KN-93 for 6 h, finally cultured in a medium containing ISO (1 μmol/L) and the highest concentration of OPD (1 μmol/L).
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8

Pharmacological Modulation of CaMKII Activity

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Staurosporine (ThermoFisher, Waltham, MA, United States) was made as a 2.15 mM stock solution in DMSO and used at a final concentration of 100 nM. KN93 (Selleckchem, Houston, TX, United States) was made up as a 3.35 mM stock solution in MQ water and used at a final concentration of 1 μM. KN92 (Biovision, Milpitas, CA, United States) was made up as a 3.6 mM stock in DMSO and used at a final concentration of 1 μM. Myristoylated-AIP (mAIP; Tocris, Bristal, United Kingdom), a membrane permeant analog of the CaMKII inhibitor AIP (Autocamtide-2-related inhibitory peptide), was made as a 293 μM stock solution in MQ water and used at a final bath concentration of 100 nM. In the isolated cell experiments, drugs were added to the external bath solution. For drugs made up in DMSO, addition of DMSO to the bath solution at the same concentration as in the test condition had no effect on pSTX3B or pCaMKII levels (not shown). For electrophysiological measurement of exocytosis, a 1 mM stock solution of AIP (Tocris, Bristal, United Kingdom) was made in MQ water and added to the internal pipette solution at a final concentration of 25 μM (Sakaba and Neher, 2001 (link); Tatone et al., 2002 (link); Gao et al., 2006 (link); Mockett et al., 2011 (link)). All other chemicals were purchased from Sigma.
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9

Stimulating Naive B Cell Differentiation

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For B-cell differentiation, isolated naive B cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 supplemented with 10% fetal bovine serum (FBS) (Life Technologies) and 1% penicillin/streptomycin (Life Technologies). Cells were stimulated with antihuman IgM (5 μg/ml, Sigma, #10759) and antihuman CD40 (1 μg/ml, Bioxcell, #BE0189) antibodies in the presence of interleukin (IL)-2 (20 ng/ml, PeproTech), IL-4 (25 ng/ml, Sino Biological) and IL-21 (50 ng/ml, Sino Biological) for 8 days.
For signaling study, B cells were stimulated with antihuman IgM (5 μg/ml) and antihuman CD40 (1 μg/ml) antibodies for 72 h. CRAC channel inhibitor YM-58483 (50 nM, MedChemExpress, USA) or CaMK2 inhibitor KN-93 (5 μM, Selleck) was included in some of the experiments. Cells were maintained in a humidified atmosphere at 37°C with 5% CO2. Cells were collected for Western blot or FACS analysis.
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10

Detailed ChIP-PCR, Mutagenesis, and Reporter Assays

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The primers used for ChIP-PCR, mutagenesis, constructing P27p-PGL3 luciferase reporters and CREB genotyping primers were listed in Supplementary Table 1. The CREB gene was cloned into the BglII sites of pRVKM plasmid using primers listed in Supplementary Table 1. The real-time RT-PCR primers used to quantify Il17, Il17f, Il21, RORα, RORγt, IkBζ, Batf, AHR and β-actin, and the Il17p-PGL3, CNS2-Il17p-PGL3 luciferase reporter constructs were described previously (Chang et al., 2011 (link), Yang et al., 2008 (link)). Most of the protein kinase inhibitors were purchased from Selleck Chemicals LLC, including H89 (Cat# S1582) for PKA and MSK1/2, PD325901 (Cat#S1036) for ERK, SB203580 (Cat#S1076) for p38, sotrastaurin (Cat#S2791) for PKC-ϴ and KN-93 (Cat#S7423) for CamKIV. The PI3K inhibitor LY294002 (Cat#L9908) was purchased from Sigma. The CREB and p27 antibodies were purchased from Cell Signaling: CREB (Cat#9197, Clone#48H2) & phospho-CREB (Cat#9198, Clone#87G3) for ChIP assays, phospho-CREB (Cat#9187, Clone#87G3) for flowcytometry assays and p27 antibody (Cat#3688, Clone#D37H1) for western blotting.
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