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6 protocols using anti ige

1

Basophil Activation Test Protocol

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The results of basophil activation are expressed as the median fluorescence intensity (MFI) of the cells. The results of the cytometry were analyzed using the program FlowJo version 9.0 (TreeStar, Ashland, Ore). As a positive control for the assay, a tube with 200 μl of whole blood, 100 μl of phosphate-buffered saline (PBS), and 3 μl of anti-IgE (Biolegend) was used. As a negative control, a tube with 200 μl of whole blood and 100 μl of PBS was used.
The CD-63 and CD203c increase were expressed as the ratio of the median fluorescence intensity (MFI) obtained with the drug to the MFI obtained with the negative control. This ratio is called stimulation index.
The sensitivity of BAT was calculated as the number of positive tests in the patients group divided by all the patients. The specificity was calculated as the number of negative tests correctly classified in the control group divided by all controls times 100.
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2

Comprehensive B Cell Immunophenotyping

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Isolated B cells were washed and stained with Live/Dead viability discrimination dye (Life Tech #L34968). Cells were subsequently blocked in 2% BSA supplemented with Fc Blocker (BioLegend) for 15 min and then stained with antibodies against B cell surface makers for 1 h [all antibodies were from BD Biosciences except CD38-PE/Texas Red (Life Technologies #MHCD3817); CD19-BV510, #562847; CD20-BUV396, #563782; CD27-BV421, #560448; IgD-APC, #348222; IgM-PerCP/Cy5.5, #314512; CD138-PE, #552026; IgG-PE/Cy7, #409316; CD45-APC/Cy7, #368516]. After staining, cells were washed two times in PBS without Mg++ or Ca2+ and then fixed in 2% PFA before analysis on a BD Fortessa or BD LSR flow cytometer. Plasmablasts were defined as CD19+CD20+IgDCD27+CD38+ B cells. B cell activation was determined with CD86 surface staining (#562432). Ig production was determined by intracellular staining with anti-IgA (Life Tech #Z25002), anti-IgE (Biolegend #325510), and anti-IgG antibodies in plasmablasts; AID was detected with antibody #Z25302 (Life Tech). For intracellular IRF5 staining, after overnight fixation, cells were permeabilized the following day in 0.1% Triton X-100 and rinsed in PBS 2× before blocking in 2% BSA solution. IRF5 staining was performed using anti-IRF5 antibody conjugated to Alexa Fluor 488 (Abcam Catalog#: AB193245).
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3

Comprehensive B Cell Immunophenotyping

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For analysis of B cells from blood, cultures or nasal tissue, cell samples were simultaneously Fc-blocked with unlabeled mouse IgG (Lampire) and ICAM-1-blocked with anti-ICAM-1, (BioLegend), which was fluorescently-labeled or not, depending upon the experiment. After 30 minutes at 4°C, B cells were stained with fluorescently tagged virus (Alexa Fluor 488-RV-A39 and Alexa Fluor 568-RV-A16), viability dye Live/Dead Aqua (ThermoFisher), and various combinations of the following fluorescent antibodies depending on the sample type and application: anti-CD3 (BioLegend), anti-CD11c (BioLegend), anti-CD19 (BioLegend), anti-CD20 (BioLegend), anti-CD27 (ThermoFisher), anti-CD38 (Becton Dickinson), anti-CCR5 (ThermoFisher), anti-CXCR3 (BioLegend), anti-CXCR5 (BioLegend), anti-IgD (ThermoFisher), anti-IgM (BioLegend), anti-IgG (BD Biosciences), anti-IgA (Miltenyi), and anti-IgE (BioLegend). After incubating for 30 minutes at 4°C, cells were then fixed and permeabilized (FoxP3 fix/perm kit, ThermoFisher), before staining for intracellular IgM (BioLegend), IgG (Becton Dickinson), IgA (Miltenyi), IgE (BioLegend), Ki-67 (BioLegend), and T-bet (BioLegend). Cells were analyzed on an LSR Fortessa Cytometer (Becton Dickinson) using FlowJo version 10.5.3 (TreeStar). (See Table S1).
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4

Comprehensive B Cell Immunophenotyping

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For analysis of B cells from blood, cultures or nasal tissue, cell samples were simultaneously Fc-blocked with unlabeled mouse IgG (Lampire) and ICAM-1-blocked with anti-ICAM-1, (BioLegend), which was fluorescently-labeled or not, depending upon the experiment. After 30 minutes at 4°C, B cells were stained with fluorescently tagged virus (Alexa Fluor 488-RV-A39 and Alexa Fluor 568-RV-A16), viability dye Live/Dead Aqua (ThermoFisher), and various combinations of the following fluorescent antibodies depending on the sample type and application: anti-CD3 (BioLegend), anti-CD11c (BioLegend), anti-CD19 (BioLegend), anti-CD20 (BioLegend), anti-CD27 (ThermoFisher), anti-CD38 (Becton Dickinson), anti-CCR5 (ThermoFisher), anti-CXCR3 (BioLegend), anti-CXCR5 (BioLegend), anti-IgD (ThermoFisher), anti-IgM (BioLegend), anti-IgG (BD Biosciences), anti-IgA (Miltenyi), and anti-IgE (BioLegend). After incubating for 30 minutes at 4°C, cells were then fixed and permeabilized (FoxP3 fix/perm kit, ThermoFisher), before staining for intracellular IgM (BioLegend), IgG (Becton Dickinson), IgA (Miltenyi), IgE (BioLegend), Ki-67 (BioLegend), and T-bet (BioLegend). Cells were analyzed on an LSR Fortessa Cytometer (Becton Dickinson) using FlowJo version 10.5.3 (TreeStar). (See Table S1).
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5

Regulatory T cell differentiation assay

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Naïve CD4 T cells stained with APC-labeled anti-CD4 (clone RM4-5) and FITC-labeled anti-CD62L (clone MEL-14) were isolated, with purity of over 98%, from IL-6 deficient OT-II mice using a FACSAria II. CD49b(DX5)+ c-kit basophils were isolated, with purity higher than 95%, from the BM culture supplemented with IL-3 (10 ng/ml, Peprotech) for 7–9 days using a FACSAria II. Conventional CD11c+ DCs were isolated, with purity higher than 90%, from BM cells cultured with GM-CSF (20 ng/ml, Peprotech) using CD11c microbeads (Miltenyi Biotec, Bergisch-Gladbach, Germany). 2.5 × 104 CD4 T cells were cultured with 0.5 × 104 basophils activated with IgE (10 μg/ml, BD biosciences) and anti-IgE (10 μg/ml, BioLegend) and mature CD11c+ DCs for 3 days. 10 μM of OVA323–339 peptide (ISQAVHAAHAEINEAGR), anti-IL-4 (10 μg/ml, clone 11B11, BD biosciences), anti-IFN-γ (10 μg/ml, clone XMG1.2, BD biosciences), anti-IL-6 (5 μg/ml, clone MP5-20F3, BD biosciences), and TGF-β (5 ng/ml, Peprotech) were added as indicated. Cell culture was performed in 96-well round-bottomed plates in a total volume of 200 μl.
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6

Quantification of Serum IgG1 and IgE

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Serum titers of total or Hpb L5 excretory secretory products (HES) reactive IgG1 and IgE were determined as previously described (McCoy et al., 2008) . Briefly, Nunc MaxiSorp 96-well plates were coated with either 1 mg/ml anti-IgE (BioLegend 406902), 5 mg/ml anti-IgG1 (Southern Biotech 1070-01) or 1-10 mg/ml HES, and incubated overnight at 4 C. Serum samples were added the next day and incubated overnight at 4 C, before the addition of 1 mg/ml alkaline-phosphatase-conjugated anti-IgE (Southern Biotech 1130-04) or anti-IgG1 (Southern Biotech 1070-06). 4-Nitrophenyl phosphate sodium salt hexahydrate (Sigma) was used as a substrate and the colorimetric reaction was read at 405 nm on a Benchmark Plus spectrophotometer (Bio-Rad).
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