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11 protocols using model 7890 gas chromatograph

1

GC-MS Analysis of Organic Compounds

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Gas chromatographic analyses were performed with an Agilent gas chromatograph model 7890 equipped using an Agilent 5975 mass spectrometer and 7683 automatic sampler (Agilent, Santa Clara, CA, USA). Samples were separated on an HP-INNOWAX capillary column (60 m × 0.25 mm × 0.25 μm, J &W Scientific, Folsom, CA, USA). The carrier gas was helium (purity > 99.999%) at 1 mL/min. The temperature in the injection port was 250 °C. Samples were injected by placing the SPME fiber at the GC inlet for 8 min in the splitless mode. The oven temperature program was as follows: 50 °C for 1 min, then increased to 220 °C at a rate of 3 °C/min and held at 220 °C for 5 min. The mass detector conditions were as follows: electron impact mode (MS/EI) at 70 eV, mass scanning range m/z 20 to 350 U, ionic source temperature 230 °C. The mass spectrometry interface temperature was 280 °C. The mass spectrophotometer was operated in the selective ion mode under autotune conditions, and the area of each peak was determined using the ChemStation software F.01.01.2317 (Agilent Technologies, Inc. Santa Clara, CA, USA) [44 (link)].
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2

GC-MS Analysis of Volatile Compounds

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Qualitative analysis was performed using an Agilent gas chromatograph model 7,890 coupled to a Agilent mass spectrometer model 5975 equipped with a DB5 MS column (20 m × 0.18 mm; 0.18 μm). The oven temperature was 50°C and remained constant for 3.2 min; then, it was increased to 300°C at a rate of 8°C/min. The injector temperature was 280°C. Ionization was obtained by electron impact at 70 eV, and the electron multiplier was maintained at 2200 eV. The temperature of the ion source was 230°C. Mass spectral data were acquired in the scan mode in the range m/z 33–450. The flow of carrier gas (helium) was set at 0.9 ml/min; compound identification was made by comparison of their spectra and RI with those of libraries such as Adams (2008), Nist (2008), and Köning, Hochmuth, and Joulain (2001) and were incorporated in the laboratory.
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3

Fatty Acid Methyl Esters Analysis

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For fatty acids analysis, 0.75 mL of the obtained lipid extract, prepared according to the steps described above, was transferred to a screw-capped glass test tube, and then 0.1 mL toluene and 0.15 mL HCl solution (8.0%) were added. The tube was vortexed and incubated overnight at 45 °C. After cooling to room temperature, 0.5 mL hexane and 0.5 mL water (deionized) were added to the extract of fatty acid methyl esters (FAMEs). The tube was vortexed, and then 0.2 mL of the hexane layer was moved to the chromatographic vial, and 1.6 µL of the extracted samples was analyzed.
The FAME analysis was carried out with an Agilent Model 7890 gas chromatograph equipped with a 5975C mass detector. A capillary column HP 5 MS methyl polysiloxane (30 m × 0.25 mm i.d. × 0.25 mm ft) was used with helium as a carrier gas. The temperature of the column was maintained at 60 °C for 3 min and was increased to 212 °C at a rate of 6 °C min−1, then to 245 °C at a rate of 2 °C min−1, and finally to 280 °C at a rate of 20 °C min−1, at which it was held for 10 min. Split injection of the injection port was performed at 250 °C. Fungal fatty acids were identified through comparison with authenticated reference standards from Sigma–Aldrich (Supelco, Bellefonte, PA, USA), and the results were expressed as a percentage of the total amount of fatty acids.
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4

Comprehensive Chemical Analysis of Airborne Particulates

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Nicotine in both the XAD-7 and solid surface samples was analyzed with an Agilent Model 7890 Gas Chromatograph (GC) coupled to an Agilent Model 5975C Mass Selective Detector (Agilent Technologies, Santa Clara, CA, USA). The XAD-7 and solid surface extracts were analyzed following ISO 16200-1 [48 ]. PG and glycerol in both the XAD-7 and solid surface samples were analyzed with an Agilent Model 6890 GC equipped with a Flame Ionization Detector. The XAD-7 and solid surface extracts were analyzed following ISO 16200-1 [48 ]. VOCs were analyzed with an Agilent Technologies Model 6890, GC equipped with a 5973 Mass Selective Detector (ISO 16000-6) [49 ]. Carbonyls were analyzed with an Agilent Model 1100 High Performance Liquid Chromatograph with a DAD-UV detector operated at 365 nm (ISO-16000-3) [50 ]. Selected trace elements were determined by Inductively Coupled Plasma-Mass Spectrometry with a Perkin Elmer DRC-e ICP-MS (EPA IO-2.1 and 3.5) [51 ,52 ]. All results for RAS are given as μg/m3. The limit of quantification (LOQ) for each compound is shown in Table 1. Results for surface samples are given as μg/cm2.
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5

GC-MS Analysis of Fungal Metabolites

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GC/MS was also used for the identification of possible degradation products. The fungal culture was homogenized with glass beads twice for 4 min at 25 m s−1 (Retsch, Ball Mill MM 400). Next, the samples were extracted twice with ethyl acetate. The extracts were dried with anhydrous sodium sulfate, evaporated under reduced pressure at 40 °C, and 2 mL of ethyl acetate was added.
The analysis was performed with an Agilent Model 7890 gas chromatograph, equipped with a 5975C mass detector. The separation was performed using a capillary column HP 5 MS methyl polysiloxane (30 m × 0.25 mm id × 0.25 mm ft). The column temperature was maintained at 60 °C for 3 min, then increased to 250 °C at the rate of 10 °C min−1 and finally to 280 °C at the rate of 20 °C min−1. The column temperature was maintained at 280 °C for 5 min. Helium was used as a carrier gas at a flow rate of 1 mL min−1. The injection port temperature was 250 °C. Split injection was used. The identification of possible metabolites was conducted using NIST MS 14 software.
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6

Bacterial Fatty Acid Profiling via GC-MS

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To Eppendorfs with bacterial lipid extract (0.375 mL), toluene (0.05 mL) and 8.0% HCl solution in methanol (0.075 mL) were added [72 (link)]. The tubes were vortexed and then incubated at 45 °C for 16 h. After cooling to room temperature, 0.5 mL hexane and 0.5 mL water were added for the extraction of fatty acid methyl esters (FAMEs). One microliter of each extract sample was analyzed using a gas chromatography system (Agilent Model 7890 gas chromatograph, equipped with a 5975C mass detector). The separation was carried out in a HP 5 MS methyl polysiloxane capillary column (30 m × 0.25 mm i.d. × 0.25 mm ft). The column temperature was maintained at 60 °C for 3 min, and then increased to 212 °C at a rate of 6 °C/min, followed by an increase to 245 °C at a rate of 2 °C/min, and finally, to 280 °C at a rate of 20 °C/min for 10 min. Helium was used as the carrier gas at a flow rate of 1 mL/min. The injection port temperature was 250 °C. Bacterial fatty acids were identified by comparison with the retention times of the authentic standards (Sigma-Aldrich, Darmstadt, Germany), and the results are expressed as a percentage of the total amount of fatty acids.
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7

Fatty Acid Methyl Esters Analysis

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The determination of fatty acid methyl esters was performed using our previously described method [25 (link)] with an Agilent Model 7890 gas chromatograph, equipped with a 5975C Mass Detector (Santa Clara, CA, USA). The separation was carried out using a capillary column HP 5 MS methyl polysiloxane (30 m × 0.25 mm i.d. × 0.25 mm ft, Agilent, Santa Clara, CA, USA). The column temperature was maintained at 60 °C for 3 min, then increased to 212 °C at the rate of 6 °C min−1, followed by an increase to 245 °C at the rate of 2°C min−1, and finally to 280 °C at the rate of 20 °C min−1. The column temperature was maintained at 280 °C for 5 min. Helium was used as a carrier gas at a flow rate of 1 mL min−1. The injection port temperature was 250 °C. Split injection was employed. The identity of fatty acid methyl esters in the samples was confirmed by the retention time and abundance of quantification ions in the authentic standards (Merck, Darmstadt, Germany).
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8

Leaf Oil Extraction and Characterization

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The oil was extracted from the plant leaves by water distillation using Clevenger type equipment (Hermex Glassware -Brazil). After extraction, it was stored in dark flasks in a refrigerator at 5ºC. The chemical properties were identified by gas chromatography using a model 7890 gas chromatograph (Agilent, USA) coupled to a model 5975 linear quadrupole type mass spectrophotometer (Agilent, USA). The oil components were identified based on the NIST11 mass spectra data (Agilent, USA) and on the Automated Mass Spectral Deconvolution Mass and Identification System (Agilent -USA). The concentration of the compounds was expressed as a percentage of the normalized peak area (each separated substance appeared as a peak on the chromatogram). The index adopted for quality was above 70%.
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9

Identification of Leaf Volatiles by GC-MS

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The leaf volatiles were subjected to gas chromatography-mass spectrometry (GC-MS) on an Agilent system consisting of a model 7890 gas chromatograph, a model 5977 mass-selective detector (EIMS, electron energy of 70 eV), and an Agilent ChemStation data system (Santa Clara, CA, USA). Volatiles in the leaf were trapped into an odorant-collecting cartridge (Tenax TA, GL Sciences, Tokyo, Japan) and subjected to GC using a newly developed non-solvent method known as dynamic-headspace and thermal-desorption system (Gerstel, Überhausen, Germany) with COMPS2XLxt multi-purpose sampler. The GC column was a DB-VRX column (Agilent, USA) with a lm thickness of 1.44 µm, length of 60 m, and internal diameter of 0.25 mm. The carrier gas was helium, with a ow rate of 2.1 mL/min. The GC oven temperature was regulated as follows: 40ºC initial temperature held for 3 min; increased at 5ºC/min to 260ºC and held for 8 min. Leaf samples (0.2 g) were placed into 20 mL vials and measured by the dynamic-headspace technique. Mass-selective detector was set at 230ºC. The volatiles were identi ed by comparing their MS fragmentation patterns to those in the MS library (NIST14 database).
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10

Identification of Leaf Volatiles by GC-MS

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The leaf volatiles were subjected to gas chromatography-mass spectrometry (GC-MS) on an Agilent system consisting of a model 7890 gas chromatograph, a model 5977 mass-selective detector (EIMS, electron energy of 70 eV), and an Agilent ChemStation data system (Santa Clara, CA, USA). Volatiles in the leaf were trapped into an odorant-collecting cartridge (Tenax TA, GL Sciences, Tokyo, Japan) and subjected to GC using a newly developed non-solvent method known as dynamic-headspace and thermal-desorption system (Gerstel, Überhausen, Germany) with COMPS2XLxt multi-purpose sampler. The GC column was a DB-VRX column (Agilent, USA) with a lm thickness of 1.44 µm, length of 60 m, and internal diameter of 0.25 mm. The carrier gas was helium, with a ow rate of 2.1 mL/min. The GC oven temperature was regulated as follows: 40ºC initial temperature held for 3 min; increased at 5ºC/min to 260ºC and held for 8 min. Leaf samples (0.2 g) were placed into 20 mL vials and measured by the dynamic-headspace technique. Mass-selective detector was set at 230ºC. The volatiles were identi ed by comparing their MS fragmentation patterns to those in the MS library (NIST14 database).
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