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Vision scanner

Manufactured by Siemens
Sourced in Germany

The Vision Scanner is a compact and versatile piece of laboratory equipment designed for high-precision optical scanning. The device utilizes advanced imaging technology to capture detailed, high-resolution scans of a variety of samples. The core function of the Vision Scanner is to provide users with accurate and reliable data acquisition for a wide range of applications in research, quality control, and industrial settings.

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11 protocols using vision scanner

1

High-Resolution Structural and Functional MRI Protocol

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Imaging was performed using a 3.0 T Siemens Vision Scanner (Erlangen, Germany) equipped with high-speed gradient. The following parameters were used for 3D T1 imaging: repetition time/echo time (TR/TE) = 2300/2.98 ms, matrix = 512 × 512, flip angle = 9°, voxel size = 0.5 × 0.5 × 1 mm3, 176 axial slices without interslice gap. Functional images were acquired from the same locations as the anatomical slices using an echo-planar imaging sequence with the following parameters: TR/TE = 2000/30 ms, matrix = 64 × 64, flip angle = 90°, interslice gap = 4.0 mm, voxel size = 3.8 × 3.8 × 4 mm3, and slices = 31. For each participant, the fMRI scan lasted for 6 min, and 190 volumes were obtained.
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2

MRI Protocols for Brain Imaging

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All patients (except one) underwent MRI of the brain around the time of the PET scans. Before 2008 all MRI-scans were performed on a 1.5 T Siemens Vision scanner, however, in 2008 the scanner was replaced by a 1.5 T Siemens Avanto scanner.
Sagittal T1-weighted images (TR 630 msec, TE 14 msec, flip-angle 90°, slice thickness 5 mm), axial double spin echo (TR 3703 msec, TE 22/90 msec, flip-angle 180°, slice thickness 5 mm) and coronal FLAIR-images (TR 9000 msec, TE 105 ms, flipangle 180°, slice thickness 3 mm) were obtained before contrast-injection, and sagittal and axial T1-weighted images (TR 588 msec, TE 17 ms, flip-angle 90°, slice thickness 5 mm) were obtained after contrast-injection (Multihance 0.2 ml/kg iv). Contrast was not given to patients with impaired kidney function.
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3

Structural MRI Acquisition Protocol

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Structural MRI scans were acquired at a field strength of 1.5 Tesla with a T1‐weighted magnetization‐prepared rapid gradient‐echo (MPRAGE) sequence (voxel size = 1 × 1 × 1.25; dim = 256 × 256 × 128; TR = 9.7 milliseconds; TE = 4.0 milliseconds) utilizing a Siemens Vision scanner (Erlangen, Germany). For each subject, three to four individual images were acquired in a single session and averaged before further processing. To reduce motion artifacts, head positioning cushions and a thermoplastic face mask were applied. More details regarding the data acquisition can be found at Marcus et al.15
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4

Resting-State MEG Signals in Healthy Adults

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MEG signals were recorded from 13 healthy adult subjects (mean age 29 ± 6 years, 5 females), already used in de Pasquale et al. (2016) (link). Subjects were asked to remain still in the MEG system while fixating a cross on a screen. We recorded 2 or 3 scans lasting 5 min from each subject. MEG signals were recorded using the 153-channel MEG system developed and installed at the University of Chieti (Della Penna et al., 2000 (link)). The system is placed within a four-layer magnetically shielded room allowing magnetometric recordings. Two EOG and two ECG channels were recorded simultaneously with the MEG signals, to be used for physiological artifact rejection. Neuro-magnetic and electrical signals were filtered in the band 0.16–250 Hz and were sampled at 1 kHz. Before and after each resting state run, the signal generated by five positioning coils placed on the subject’s head were recorded and used to co-register functional and anatomical data. Anatomical images were acquired using a 1.5 T Siemens Vision scanner, through a sagittal magnetization-prepared rapid acquisition gradient echo T1-weighted sequence (MP-RAGE) with repetition time (TR) = 9.7 s; echo time (TE) = 4 ms; α = 12°; inversion time = 1,200 ms; voxel size = 1 × 1 × 1.25 mm3.
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5

PET/CT Imaging of 18F-FDG Uptake

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PET/CT data acquisition was performed on a Siemens BiographTM mCT or Vision scanner according to the guidelines of the European Association of Nuclear Medicine (EANM; Varrone et al., 2009 (link)). The PET acquisition was started 30 min after injection of 200 MBq of 18F-FDG. The PET emission study (20 min, one-bed position) followed immediately the CT study used for attenuation correction. Ultra-law dose brain CT imaging was performed under standard conditions (120 kVp, 20 mAs, 128 × 0.6 collimation, a pitch of 1 and 1 s per rotation).
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6

Resting-state fMRI Data Collection Protocol

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All data were analyzed using a 3.0T Siemens Vision Scanner (Erlangen, Germany) equipped with high-speed gradients on the recruitment day. The following parameters were axially used for T1 anatomical imaging: repetition time/echo time (TR/TE) = 2300/2.98 ms, matrix = 512 × 512, flip angle = 9°, voxel size = 0.5 × 0.5 × 1 mm3, and 176 slices without inter-slice gap. With the same locations as the anatomical slices, functional images were acquired using an echo-planar imaging sequence with the following parameters: TR/TE = 2000/30 ms, matrix = 64 × 64, flip angle = 90°, inter-slice gap = 4.0 mm, voxel size = 3.8 × 3.8 × 4 mm3, and slices = 31. Each participant underwent fMRI scan for 6 minutes, and 190 volumes were obtained. The participants were instructed to rest with their eyes closed, not to think of anything in particular, and not to fall asleep during scanning.
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7

Structural and Functional MRI Study

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Structural and functional MRI was performed using a 3-T Siemens Vision scanner (gradient booster, standard head coil). Functional data were acquired using echo-planar imaging (whole brain coverage; 33 slices; 1 mm gap; voxel size: 3×3×3 mm; time to repeat (TR): 2 s). For the main experiment, 460 volumes were collected per session and participant. For the localizer, a total of 340 volumes were collected. Data can be made available upon request (Email: kriegstein@cbs.mpg.de).
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8

PET/CT Imaging Protocol for 18F-FDG Brain Scans

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PET/CT data acquisition was performed on a Siemens Biograph™ mCT or Vision scanner according to the guidelines of the European Association of Nuclear Medicine (EANM) [45] . The PET acquisition was started approximately 30 min after injection of 200 MBq of 18 F-FDG. The PET emission study (20 min, one bed position) followed immediately the CT study used for attenuation correction. Ultra-law dose brain CT imaging was performed under standard conditions (120 kVp, 20 mAs, 128 × 0.6 collimation, a pitch of 1 and 1 s per rotation).
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9

PET/CT Imaging Protocol for 18F-FDG

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PET/CT data acquisition was performed on a Siemens BiographTM mCT or Vision scanner according to the guidelines of the European Association of Nuclear Medicine (EANM) [64]. The PET acquisition was started approximately 30 min after injection of 200 MBq of 18F-FDG. The PET emission study (20 min, one-bed position) was conducted followed immediately by the CT study used for attenuation correction. Ultra-law dose brain CT imaging was performed under standard conditions (120 kVp, 20 mAs, 128 Å ~ 0.6 collimation, a pitch of 1 and 1 s per rotation).
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10

PPA-AD Tau PET Neuroimaging Protocol

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PPA-AD participants were retrospectively recruited from Northwestern’s Mesulam Center for Cognitive Neurology and Alzheimer Disease based on the presence of: (1) a root diagnosis of PPA made by a clinician (M.-M.M.), (2) a positive 18F-flortaucipir tau PET scan on a Siemens Vision scanner, (3) structural MRI on a 3T Siemens Prisma, and (4) neuropsychological testing. Below, we describe the details of data collection and processing for each modality.
As of March 2020, 19 PPA-AD participants fulfilled criteria, of which 15 had additional biomarkers of AD, including CSF, amyloid PET, and/or autopsy diagnosis. Twelve participants had returned for follow-up neuropsychological testing a year after the initial visit.
Thirty-eight cognitively normal controls (NC) with structural MRI were retrospectively recruited and used to visualize areas of peak atrophy. NC group demographics are available in Supplemental Table 1. There were no significant differences in age, sex, education, or handedness between PPA and NC groups (all p > 0.05).
Northwestern’s Institutional Review Board approved the study. Informed consent was obtained from each participant in accordance with the principles established by the Declaration of Helsinki.
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