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Click ittm edu alexa fluor 488 imaging kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Click-iTTM EdU Alexa Fluor® 488 Imaging kit is a fluorescence-based assay that enables the detection and visualization of DNA synthesis in proliferating cells. It utilizes a modified nucleoside, EdU (5-ethynyl-2'-deoxyuridine), which is incorporated into newly synthesized DNA during cell division. The incorporated EdU is then detected through a copper-catalyzed click reaction with a fluorescent Alexa Fluor® 488 azide dye.

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7 protocols using click ittm edu alexa fluor 488 imaging kit

1

Quantifying Viral Infection and DNA Replication

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HeLa Kyoto H2B-mCh cells seeded on coverslips were either mock infected or infected with WR HA-D5 (MOI 8). At 15 min before fixation, cells were fed with 200 μL 4× EdC (40 μM, final = 10 μM). Cells were washed with PBS and fixed with 4% PFA at RT for 15 min. Fixed samples were washed 3× with PBS and stained for EdC using the Click-iTTM EdU Alexa FluorTM 488 Imaging Kit (Invitrogen), following the manufacturer’s instructions. Coverslips were mounted with Immu-Mount (Thermo Scientific, Loughborough, UK), and a minimum of 5 different locations per coverslip were imaged with a 100× oil immersion objective (NA 1.45) on a VT-iSIM microscope (Visitech; Nikon Eclipse TI, Sunderland, UK). Nuclei were counted manually using ImageJ.
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2

Viral Infection and DNA Replication

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HeLa Kyoto H2B-mCh cells seeded on coverslips were either mock infected or infected with WR HA-D5 (MOI 8). 15 min before fixation, cells were fed with 200 μl 4x EdC (40 μM, final = 10 μM). Cells were washed with PBS and fixed with 4 % PFA at RT for 15min. Fixed samples were washed 3x with PBS and stained for EdC using the Click-iT TM EdU Alexa FluorTM 488 Imaging Kit (Invitrogen), following manufacturer's instructions. Coverslips were mounted with Immu-Mount (Thermo Scientific), and a minimum of 5 different locations per coverslip were imaged with a 100x oil immersion objective (NA 1.45) on a VT-iSIM microscope (Visitech; Nikon Eclipse TI). Nuclei were counted manually using ImageJ (minimum 450 nuclei per sample and biological repeat).
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3

Quantifying Cell Proliferation with EdU Staining

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EdU staining was performed to visualize proliferating cells using a Click-iTTM EdU Alexa Fluor® 488 Imaging kit (Invitrogen) according to the manufacturer's instructions. Cells were seeded into eight-well slides and cultured overnight. The following day, 10 µM EdU was added to the culture media and incubated for an hour. The cells were then fixed and permeabilized. Nuclei were counterstained with Hoechst 33342. Soft agar colony formation assays were performed as described in a previous study 16 (link).
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4

Cell Proliferation Quantification Using EdU Assay

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The Click-iTTM EdU Alexa Fluor 488 Imaging kit (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) was used to assess cell proliferation. Cells were visualized using an ImageXpress Micro XL automated digital imaging and High Content imaging and Analysis system (Molecular Devices LLC, San Jose, CA, USA).
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5

EdU Staining and Nuclear Analysis

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To perform EdU (5-ethynyl-2'-deoxyuridine) staining, we used the Click-iTTM EdU Alexa Fluor 488 Imaging Kit (C10337; Invitrogen) according to the manufacturer’s instructions. The cells were cultured for 1 h in EdU. Next for nuclear staining, the samples were washed with cold PBS and centrifuged (5 min, 1,000 rpm) at 4°C. RNase was added to a final concentration of 0.2 μg/μl, and incubated at room temperature (RT) for 30 min. Then, 1 ml of 2 μg/ml Hoechst 33342 was added to the samples, which were incubated at RT for 30 min. After washing, each sample was analyzed using the BioRad ZE5 at the Columbia University Stem Cell Initiative Flow Cytometry Core.
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6

Circulating Biomarkers and Endothelial Cells

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A fasting, venous blood sample (approximately 50 ml) will be taken at rest. For visits 1 and 2, a further venous blood sample (approximately 100 ml total) will be taken after exercise testing. Blood samples will be centrifuged, separated within 30 min, and stored at − 80 °C. Fasting lipid and metabolic profiles, including C-reactive protein, will be measured at the Oxford Hospital Biochemistry using routine clinical quality validated assays. Additional circulating biomarkers will be quantified using standard commercially available assays [16 (link)]. Circulating endothelial colony forming cells (ECFCs) and peripheral blood mononuclear cells (PMBCs) will be isolated and cultured from peripheral blood as previously described [28 ]. Cells in culture will be followed from days 7–30 to assess ECFC colony formation. ECFCs will then be expanded to allow cell phenotype, clonogenic and functional assessments including cell proliferation (EdU incorporation) using the Click-iTTM EdU Alexa FluorTM 488 Imaging kit (Thermo Fisher Scientific), cell migration and vascular cord formation capacity assessed by the numbers of closed tubes and branching formed on Matrigel (Corning Matrigel Matrix). Remaining PBMCs and ECFCs will be frozen in 10% dimethyl sulfoxide (Sigma Aldrich) fetal bovine serum (Gibco, Thermo Fisher Scientific) and stored in liquid nitrogen.
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7

Proliferation Rate Quantification of ECFCs

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The proliferation rate was assessed through the quantification of 5‐ethynyl‐2′‐deoxyuridine (EdU) cellular incorporation using the Click‐iTTM EdU Alexa FluorTM 488 Imaging kit (Thermo Fisher Scientific). There were 4.0×104 ECFCs plated on collagen‐coated flasks, 1.86‐cm2 surface area, maintained with complete EBM‐2 media, and grown for 24 hours. Similar culture conditions were used for all individuals. Cells were then incubated with 10 µmol/L EdU in complete EBM‐2 media for 4.5 hours at 37 °C, then fixed with 3.7% formaldehyde in PBS, permeabilized with 0.5% Triton X‐100 in PBS, and stained according to kit instructions. Assays were performed in triplicate and cell images obtained using a fluorescence microscope (Leica, Wetzlar, Germany) and a ×10 objective. The number of cells under proliferation and incorporating EdU into their DNA, stained positive for EdU (AlexaFluor 488), were counted in 3 to 5 full pictures per assay, as well as the total number of cells with nuclei stained with 4′,6‐diamidino‐2‐phenylindole. The percentage of proliferating cells (a measure of proliferation rate) was then calculated.
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