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Dsm 960

Manufactured by Zeiss
Sourced in Germany

The DSM 960 is a scanning electron microscope (SEM) manufactured by Zeiss. It is designed for high-resolution imaging and analysis of a wide range of materials at the micro and nano scale. The instrument features a stable electron column, advanced detection systems, and user-friendly software interface to enable efficient and accurate data collection.

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11 protocols using dsm 960

1

Characterization of Microbial Ultrastructure

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Colonized gypsum samples were processed for SEM-BSE and energy dispersive X-ray spectroscopy (EDS) microanalysis as described in Wierzchos et al. (2011 (link)). As the intensity of the BSE signal depends on the mean atomic number of the sample, the SEM-BSE technique identifies heavy metal-stained ultrastructural elements of microbial cells. SEM-BSE was then used in combination with EDS to characterize the minerals associated with specific cell aggregates. Gypsum samples were observed using a scanning electron microscope (DSM960 Zeiss, Oberkochen, Germany) equipped with a solid-state, four diodes BSE detector plus an auxiliary X-ray EDS microanalytical system (Link ISIS Oxford, UK).
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2

Microscopic Characterization of Rock Samples

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Colonized rock samples were processed for scanning electron microscopy in backscattered electron mode (SEM-BSE) observation and/or energy dispersive X-ray spectroscopy (EDS) microanalysis according to methods by Wierzchos and Ascaso (1994) (link) and Wierzchos et al. (2011) (link). SEM-BSE was used in combination with EDS to characterize the lithic substrates. Rock samples were observed using a scanning electron microscope (DSM960 Zeiss; Carl Zeiss) equipped with a solid-state, four diodes BSE detector plus an auxiliary X-ray EDS microanalytical system (Link ISIS Oxford, UK).
Fluorescence microscopy (FM) in structural illumination microscopy mode (SIM) using DAPI nucleic acids stain was performed on cell aggregates gently isolated from the chasmoendolithic habitat (Wierzchos et al., 2011 (link)). The samples were examined using a fluorescence microscope (AxioImager M2, Carl Zeiss, Germany) in SIM mode with a ApoTome (commercial SIM by Zeiss) system for 3 dimensional (3D) visualization of cell aggregates (Wierzchos et al., 2011 (link)).
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3

Gypsum Deposits and Microbial Cell Morphology

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We characterize the features of gypsum deposits and internal micromorphology of microbial cells in their natural hydrated state using low temperature scanning electron microscope (LT-SEM) according to procedures described by Wierzchos et al. (2012b (link)). The LT-SEM (DSM960 Zeiss, Oberkochen, Germany) was equipped with a cryotransfer system (CT1500, Oxford, UK) and with imaging systems using secondary electrons (SE) and backscattered electrons (BSE) detectors, and with an X-ray energy dispersive spectroscopy (EDS) system.
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4

EDX Analysis of Crown-Ether-SiNPs

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Energy dispersive X-ray spectroscopy analysis of crown-ether-conjugated SiNPs was performed before and after encapsulation of non-radioactive sodium (NaCl solution) with a DSM960 scanning electron microscope (Carl Zeiss, Oberkochen, Germany).
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5

Quantitative Chemical Analysis of Bone Substitute

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EDX (energy-dispersive x-ray scattering) measurements of silica concentration were made in two randomly chosen animals in each group at every point of time. A scanning electron microscope (DSM960, Zeiss, Jena, Germany) was used to determine the local chemical composition of the BS. Cross sections of the tibia defect area were sputter-coated with a thin Au–Pd layer. Surface topography of the biomaterial was examined using an accelerating voltage of 10 kV. Quantitative results of chemical composition were determined with IDFix (IDFix version 7.9.0, SAMx, Trappes, France).
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6

Scanning Electron Microscopy of Peach Leaf Sections

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At the end of the experimental period, images of cryo-fractured transversal peach tree leaf sections were obtained with a digital scanning electron microscope (SEM) (Zeiss DSM 960, Oberkochen, Germany) as described elsewhere (Ojeda-Barrios et al., 2012 (link)). Sections of fresh peach leaf tissue (2.5 × 2.5 mm leaf pieces) were mounted on aluminum stubs, cryo-fixed in slush N2, cryo-transferred to a vacuum chamber at −180°C, and fractured using a stainless steel spike. Once inside the microscope, the samples underwent superficial etching under vacuum and were overlaid with gold. Fractured samples were observed at low temperature using secondary and back-scattered (BSE) electrons.
Semi-quantitative Fe analysis in the peach tree transversal leaf sections was carried out using microprobe analysis with an Energy Dispersive X-ray (EDX) system (Pentaflet, Oxford, UK), using only smooth surfaces (Hess et al., 1975 (link)). Semi-quantitative analysis was carried out using standard ZAF (atomic number, absorption and fluorescence) correction procedures with Link Isis (Oxford, UK) v.3.2 software. Eight points of analysis per leaf tissue and three leaves per treatment were analyzed.
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7

Cryo-Scanning Electron Microscopy of Leaf Structure

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Leaf pieces were mounted on aluminum stubs with adhesive (Gurr®, optimum cutting temperature control; BDH, Poole, UK), cryo-fixed in slush nitrogen (−196°C), cryo-transferred to a vacuum chamber at −180°C, and then fractured using a stainless steel spike. Once inside the microscope, the samples underwent superficial etching under vacuum (−90°C, 120 s, 2 kV), and then were overlaid with gold for observation and microanalysis. This freeze-fracture procedure leads to cell rupture only at the fracture plane, whereas the general internal leaf structure is well-preserved. Fractured samples were observed at low temperature with a digital scanning electron microscope (Zeiss DSM 960, Oberkochen, Germany) using secondary and back-scattered electrons. Secondary electron images (1024 × 960 pixels) were obtained at 133 eV operating at a 35° take-off angle, an accelerating voltage of 15 kV, a working distance of 25 mm and a specimen current of 1–5 nA. Microscopy was run in the Institute of Agricultural Sciences-CSIC (ICA-CSIC), Madrid, Spain.
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8

Bagasse Morphology Analysis by SEM

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Bagasse morphology was analyzed by SEM before and after undergoing pretreatments. Samples from surfaces or transversal sections (obtained by fracture in liquid N2) were oven dried and coated with Au in a SCD 050 sputter coater (Oerlikon-Balzers, Balzers, Liechtenstein) Sample imaging was carried out using the scanning electron microscopes, models DSM 960 (Zeiss, Oberkochen, Germany) or JSM 5900LV (Jeol, Tokyo, Japan).
Sample features such as lumen diameters and cell wall thickness were manually measured using the program Axio Vision 4.8 (Carl Zeiss, Oberkochen, Germany). Averaged values of the lumen diameters were obtained by measuring about 350 lumens from different regions of raw bagasse and treated samples (four images by sample). Since most of the lumens have a distorted circumferential aspect, two diameters were measured: the maximum and the minimum axis, approximately perpendicular to each other, so that a mean diameter could be obtained for each lumen.
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9

SEM Analysis of Biofilm Samples

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Scanning electron microscope (SEM) analysis was performed. Biofilm samples from treated anodes and cathodes were compared with untreated graphite samples (control). The samples were immersed in 0.1 mol L−1 cacodylate buffer (pH 7.4) and then also in glutaraldehyde (2.5% w/v). Then, the samples were dehydrated using increasing ethanol concentrations (30%, 50%, 70% and 100%). A critical-point drier was used to fix dried samples. Then, a sputter-coated 40 nm gold layer was introduced. The coated samples were observed via SEM (Zeiss, model DSM-960, Germany), and digital images were taken.
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10

Ultrastructural Analysis of Mouse Tissues

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Specimens (from 3 week old mice) were fixed with 1.5% glutaraldehyde and 1.5% paraformaldehyde in 0.1 M sodium phosphate buffer, pH 7.3 for 3 hours at room temperature and postfixed for two hours in 2% osmium tetroxide in 0.1 sodium phosphate buffer. After dehydration in graded ethanol, samples for scanning electron microscopy (SEM) were dried in a critical-point dryer (Polaron, Watford, UK), mounted on stubs, and coated with gold-palladium in a cool sputter coater (Fisons Instruments Uckfield, UK). The specimens were examined using a scanning electron microscope DSM 960 (Zeiss Oberkochen, Germany).
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