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5 protocols using ha k48

1

Plasmid Transfection for EIF3H Study

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The wild-type and mutant constructs of EIF3H plasmids were purchased from the Hanbio Biotechnology Co., Ltd. (Shanghai, China). The HA-K48, HA-K63, and HA-Ub plasmids were acquired from Addgene. The small interfering RNAs targeting EIF3H (5ʹ-GCAACTCTTGGAAGAAATATA-3ʹ) and (5ʹ-CCCAAGGATCTCTCTCACTAA-3ʹ) were gained from Ruibo Biotechnology Co., Ltd. (Guangzhou, China). Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) was utilized for plasmid and siRNA transfection according to the manufacturer's recommendations.
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2

Molecular Mechanisms of NRF2 Regulation

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GFP‐polyQ74 (#40262), GFP‐p62 (#38277), GFP‐NRF2 (#21549), GFP‐KEAP1 (#28025), Flag‐KEAP1 (#28023), Myc‐NRF2 (#21555), Flag‐NRF2 (#36971), HA‐K48 (#17605), HA‐K63 (#17606), Flag‐ULK1 (#27636) were procured from Addgene. GFP‐TRIM16 and Flag‐TRIM16 were cloned as described previously (Chauhan et al, 2016). Myc‐TRIM16, Myc‐TRIM16 deletion constructs, and His‐K63‐UB were generated using Gateway cloning strategy as per standard protocol (Invitrogen).
The siRNA for NRF2 and p62 were purchased from Sigma, and TRIM16, Ubb, Ube2n siRNA were from Dharmacon. For overexpression experiments, HEK293T cells were transfected using calcium phosphate method as per the manufacturer's instructions (Profection, Promega). Other cells are transfected using Effectene (Qiagen) or Viafect (Promega) or Interference (Polyplus) as per the manufacturer's instruction.
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Plasmids and siRNAs for Ubiquitin Research

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The The full-length and deletion mutant constructs of TAZ and USP26 were obtained from Hanbio Biotechnology Co. Ltd. (Shanghai, China). The HA-K6, HA-K11, HA-K27, HA-K29, HA-K33, HA-K48, HA-K63, and HA-Ub plasmids were acquired from Addgene. Small interfering RNAs targeting USP26 (siRNA-1: 5′-GCACAAGACUUCCGUUGGA-3′; 5′-AAACAGAUCUGGUUCACUU-3′) were synthesized by Genepharma (Shanghai, China).
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4

OTUB1 and YAP Regulation Plasmids

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The expression plasmid encoding OTUB1-flag and OTUB1 truncation mutants were constructed by PCR and subsequent insertion of the corresponding fragment into GFP-N1 vector. The YAP-myc and YAP truncation mutants were constructed by PCR and subsequent insertion of the corresponding fragment into pcDNA3.1 vector. The HA-K48, K63, HA-Ub and TEAD-reporter plasmids were purchased from Addgene. The plvx-shRNA2-OTUB1, pCDH-EF1-OTUB1-flag, pCDH-EF1-YAP-flag and pCDH-EF1-YAP-S5A-flag were constructed into corresponding vector. To produce lentivirus, the expression vector transfected into HEK293 cells along with the packaging plasmid psPAX2 and the envelope plasmid pMD2.g using Lipofectamine 2000 (Invitrogen). The siRNA sequences were as follows: siOTUB1-1: 5′-GAC GGC AAC UGU UUC UAU C-3′, and siOTUB1-2: 5′-GAC GGA CUG UCA AGG AGU U-3′. The shRNA sequences were as follows: shOTUB1-1: GGA TCC GTT AAC TGT CTG GCC TAT GAT TCA AGA GAT CAT AGG CCA GAC AGT TAA TTT TTT GAA TTC and siOTUB1-2: GGA TCC GGA CGG ACT GTC AAG GAG TTT TCA AGA GAA ACT CCT TGA CAG TCC GTC TTT TTT GAA TTC.
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5

Characterization of NRF2-KEAP1 Pathway

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GFP-polyQ74 (#40262), GFP-p62 (#38277), GFP-NRF2 (#21549), GFP-KEAP1 (#28025), Flag-KEAP1 (#28023), Myc-NRF2 (#21555), Flag-NRF2 (#36971), HA-K48 (#17605), HA-K63 (#17606), Flag-ULK1 (#27636) were procured from Addgene. GFP-TRIM16 and Flag-TRIM16 were cloned as described previously (Chauhan et al, 2016 (link)). Myc-TRIM16, Myc-TRIM16 deletion constructs, and His-K63-UB were generated using Gateway cloning strategy as per standard protocol (Invitrogen).
The siRNA for NRF2 and p62 were purchased from Sigma, and TRIM16, Ubb, Ube2n siRNA were from Dharmacon. For overexpression experiments, HEK293T cells were transfected using calcium phosphate method as per the manufacturer’s instructions (Profection, Promega). Other cells are transfected using Effectene (Qiagen) or Viafect (Promega) or Interference (Polyplus) as per the manufacturer’s instruction.
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