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3 protocols using pemafibrate

1

Transcriptomics and Biochemical Profiling of PPAR Modulation

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The following reagents and instruments were used: absolute ethanol (Sinopharm Chemical Reagent Co., Ltd.), High Sensitivity DNA Kit (Agilent p/n 5067–4626), SuperScript II Reverse Transcriptase with 100 mM DTT and 5X First-Strand Buffer (Invitrogen, 18064014), TruSeq Stranded Total RNA LT Sample Prep Kit 48 Samples (Illumina, 15032612), TruSeq Stranded mRNA LT Sample Prep Kit (Illumina, 15032612), Ribo-Zero rRNA Removal Kits (Epicentre, MRZMB126), Agencourt AMPure XP Kit (Beckman p/n A63881), Qubit dsDNA HS Assay Kit (Invitrogen, p/n Q32850), Trizol (Takara), alanine aminotransferase (ALT/GPT) test kit (Nanjing Jiancheng Bioengineering Institute, C009-2), triglyceride (TG) test kit (Nanjing Jiancheng Bioengineering Institute, A110-1), Reverse Transcription Kit (Thermo Scientific), qPCR Kit (TaKaRa), SDS-PAGE gel rapid preparation kit (Biotime Biotechnology), PPARα agonist pemafibrate (MedChemExpress), and PPARγ inhibitor GW9662 (MedChemExpress).
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2

Hypoxia-Reoxygenation Injury in H9c2 Cardiomyocytes

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The embryonic rat cardiomyocyte-derived cell line H9c2 was obtained from the Cell Resource Center, Institute of Basic Medicine, Chinese Academy of Medical Sciences and cultured in high-glucose DMEM (cat. no. 11965092; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.), 100 U/ml penicillin and 100 µg/ml streptomycin at 37˚C in a humidified incubator with 5% CO2. The cells (1x106 cells/well) were seeded into 6-well plates. Prior to the experiments, the cells were starved in 1% FBS-supplemented low glucose DMEM (cat. no. 11885076; Thermo Fisher Scientific, Inc.) for 24 h and divided into the following groups: i) Low glucose (control; final concentration, 5.5 mmol/l); ii) high glucose (HG; final concentration, 33 mmol/l); iii) HG + hypoxia/reoxygenation (HG + H/R); and iv) HG + H/R + 50 nmol/l pemafibrate (MedChemExpress). Briefly, when the cells reached 60% confluence, they were pre-treated with control or HG media for 48 h. Subsequently, the H/R model was induced by culturing the cells for 6 h in hypoxic conditions (95% N2 and 5% CO2) with 1% FBS-DMEM, followed by 4 h of reoxygenation in normal culture conditions. pemafibrate was dissolved in DMSO (203.85 mmol/l) before being added to media.
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3

Pemafibrate Metabolism and Biomarker Assessment

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The pemafibrate was purchased from MedChemExpress (Monmouth Junction, NJ, USA) and used by adding 10% DMSO and 90% corn oil in our experiments. The microplate test kits used for measuring the levels of alanine aminotransferase (ALT) and aspartate aminotransferase (AST) were bought from the Jiancheng Bioengineering Institute (Jiancheng Biotech, Nanjing, China). Enzyme-linked immunosorbent assay (ELISA) kits were acquired from Anogen (Ontario, Canada). The PrimeScript RT Reagent Kit and SYBR Premix Ex Taq were purchased from TaKaRa Biotechnology (Dalian, China).
During the whole experimental process, we used many antibodies, including anti-Bax, anti-caspase 3, anti-caspase 9, anti-Beclin-1, PPARα (Proteintech, Chicago, IL, USA), anti-TNF-α, anti-Bcl-2, anti-microtubule associated protein 1 light chain 3 (LC3), anti-JAK2, anti-STAT3, anti-p-STAT3 (Cell Signaling Technology, Danvers, MA, USA), anti-IL-6, and anti-IL-1β (Antibody Revolution, San Diego, CA, USA).
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