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10 protocols using alexa fluor 594 conjugated anti mouse igg antibody

1

Cardiac Fibrosis and Apoptosis Assessment

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Formalin fixed, parrafin‐embedded heart sections were stained with Masson trichrome28 and Alcian Blue18 as described previously. Fibrosis area in the heart was quantified using Image J software.29 For detection of cardiomyocyte apoptosis, heart sections were immunostained using anti‐cardiac troponin T (Abcam, ab10214; 1:400 dilution), followed by incubation with alexa fluor 594‐conjugated anti‐mouse IgG antibody (Invitrogen, A‐21203; 1:500 dilution). Subsequently, apoptotic cells were detected using the in situ Cell Death Detection Kit (Roche, #11684795910). For CS detection, heart sections were immunostained using antibody anti‐CS A (2H6) antibody (Cosmo Bio, NU‐07‐001; 1:5000 dilution), followed by incubation with fluorescein‐conjugated anti‐mouse IgM antibody (TCI Chemicals, G0453; 1:200 dilution). For both immunostaining, mouse IgG blocking reagent and M.O.M antibody diluent from M.O.M immunodetection kit (Vector Laboratories, PK‐2200) were used for reducing background signal.
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2

MHC-I and Apoptosis Assessment

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Cells were seeded in black 96-well plates with clear bottom. After treatment for 48 hours, cells were fixed in 4% paraformaldehyde (Thermo Fisher) for 15 min at RT and permeabilized in 0.25% Triton X-100 (Sigma-Aldrich) for 20 min at RT. Blocking was done using 5% goat serum (Invitrogen) for 2 hours at RT. Staining of MHC-I (HLA-A/B/C molecules) was carried out using anti-MHC-I antibody (W6/32) (#ALX-805-711-C100, Enzo, 1:200 O/N at 4°C) and Alexa Fluor 594-conjugated anti-mouse IgG antibody (#A11005, Invitrogen, 1:2000 for 2 hours RT). Furthermore, apoptosis was assessed by the detection of fragmented DNA using the Click-iT-Plus TUNEL Assay (Invitrogen, Waltham, Massachusetts, USA) according to the manufactures protocol. Nuclei staining was done with 0.5 µg/mL DAPI (Sigma-Aldrich) or 5 µg/mL Hoechst 33342 (Invitrogen) in PBS. Fluorescence was measured using the ImageXpress PICO Automated Cell Imaging System (Molecular Devices (UK) Limited, Berkshire, UK) and analyzed with the acquisition software (CellReporterXpress 2.9.3). Fluorescence was visualized using a Nikon ECLIPSE Ti2 microscope (Nikon, Tokyo, Japan). Images were acquired at x20 and x60 magnification and prepared using FIJI software (version 1.49).
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3

Evaluating Myostatin Expression in L. casei

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For flow cytometric analysis, L. casei cells were harvested, washed twice with PBS, and resuspended in Tris-EDTA (TE) buffer containing mouse anti-myostatin antibody (ab201954, Abcam Cambridge, UK). The cell suspensions were washed twice with PBS and then incubated on ice for 2 h with fluorescein isothiocyanate-conjugated anti-mouse IgG antibody (Molecular Probes, Eugene, OR, USA) in TE buffer. The resulting cell pellets were resuspended in PBS and assayed with a Navios flow cytometer using the Kaluza software (Beckman Coulter, Brea, CA, USA). For immunofluorescence, cells labeled with mouse anti-myostatin antibody (ab201954, Abcam, Cambridge, UK) and Alexa Fluor® 594-conjugated anti-mouse IgG antibody (Molecular Probes, Eugene, OR, USA) were examined using a fluorescence microscope (Axioskop 2, Carl Zeiss, Oberkochen, Germany) and photographed using an Axiocam HR camera (Carl Zeiss, Oberkochen, Germany). The exposure times were identical.
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4

Immunostaining of Zebrafish Hearts

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Whole mount zebrafish embryos were immunostained with a mouse monoclonal antibody against Zn5 (1:500; Hybridoma Bank, USA) and Alexa Fluor 594-conjugated anti-mouse IgG antibody (1:1000, Molecular Probes, USA) as a secondary antibody. Images of the immunostained hearts were obtained with a Zeiss LSM5 Pascal confocal microscope.
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5

Characterization of Wharton's Jelly Mesenchymal Stem Cells

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Cultured WJ-MSC were visualized with bright field microscopy (Leica DFC 300 FX, Leica Microsystems, Wetzlar, Germany). For the analysis of cell surface markers, WJ-MSC were seeded in 2-well chamber slides at a density of 2000 cells/cm2. Upon adherence, cells were fixed with 4% paraformaldehyde (PFA) in PBS, blocked with PBS containing 1% bovine serum albumin (BSA; Merck KGaA, Darmstadt, Germany) and stained with fluorescein isothiocyanate (FITC)-conjugated mouse monoclonal antibodies against CD90 (11-0909-42, Thermo Fisher Scientific Inc.) and CD45 (550539, BD Biosciences, Franklin Lakes, NJ, USA), and with a polyclonal rabbit antibody against CD73 (550256, BD Biosciences Inc.). The antibodies were diluted 1:100 in blocking buffer and incubated overnight. For the detection of the unconjugated antibody against CD73, the cells were incubated the next day with an Alexa-Fluor 594-conjugated anti-mouse IgG antibody (1:1000, a11005, Thermo Fisher Scientific Inc.) for 1 h at room temperature. Stained WJ-MSC were analysed using a fluorescent microscope (Leica CTR 6000).
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6

Immunofluorescence Microscopy Protocol

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Indirect immunofluorescence microscopy was performed as described previously (70 (link)), using rabbit anti-FLAG polyclonal antibody (1/1000 dilution) (66 (link)) and mouse anti-HA mAb (HA-7; 1/400 dilution; Merck) as primary antibodies and Alexa Fluor 488-conjugated anti-rabbit IgG antibody and Alexa Fluor 594-conjugated anti-mouse IgG antibody (1/200 dilution each; Thermo Fisher Scientific) as secondary antibodies. Cells were mounted on glass microscope slides with ProLong Gold Antifade reagent (Thermo Fisher Scientific) and observed under a Leica DM5000B microscope (Leica Microsystems).
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7

Characterization of hWJ-MSCs by Flow Cytometry

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At passage number 6, hWJ-MSCs were visualized with bright field microscopy followed by flow cytometric analysis of cell surface markers. The cells were stained with fluorescein isothiocyanate-conjugated mouse monoclonal antibodies against human cluster of differentiation (CD) 105 (AbD Serotec, Oxford, UK), CD90 (Acris Antibodies, San Diego, CA, USA), CD73 (BD Biosciences, Franklin Lakes, NJ, USA), CD45 (BD Biosciences), CD34 (BD Biosciences), CD19 (Millipore, Billerica, MA, USA) and CD14 (Millipore), and human leukocyte antigen–antigen D related (HLA-DR) (BD Biosciences). An Alexa-Fluor 594-conjugated anti-mouse IgG antibody (Thermo Fisher Scientific) was used to detect the unconjugated mouse monoclonal antibodies against human CD73 (BD Biosciences) and CD19 (Millipore). Antibodies were diluted in 1% FBS and phosphate-buffered saline (PBS) to their working concentration and incubated with hWJ-MSC for 15 min at 4 °C. At least 10′000 events were acquired on a LSR II flow cytometer (BD Biosciences) and data were analyzed using the FlowJo software (Tree Star, Inc., Ashland, OR, USA).
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8

Characterization of Wharton's Jelly Mesenchymal Stem Cells

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WJ-MSC were analysed by flow cytometry for cell surface markers as previously described [7 ]. The cells were stained with an adenomatous polyposis coli protein-conjugated (APC) mouse monoclonal antibody against CD105 (562408, BD Biosciences Inc.) and FITC-conjugated mouse monoclonal antibodies against CD90 (SM1170F, OriGene Technologies, Inc., Rockville, MD, USA), CD45 (555482, BD Biosciences Inc.), CD34 (555821, BD Biosciences Inc.), CD14 (MAB1219F, Merck KGaA), and human leukocyte antigen–antigen D related (HLA-DR) (555811, BD Biosciences Inc.), as well as the unconjugated antibodies against CD73 (550256, BD Biosciences Inc.) and CD19 (FCMAB184F, clone HD37, Merck KGaA). An Alexa-Fluor 594-conjugated anti-mouse IgG antibody (a11005, Thermo Fisher Scientific Inc.) was used to detect CD73 and CD19 antibodies. All antibodies were diluted in PBS containing 1% FBS to their respective working concentrations (Supplementary Table 1) and incubated with WJ-MSC for 15 min at 4 °C. At least 10’000 events were acquired on a LSR II flow cytometer (BD Biosciences Inc.) and data were analysed using FlowJo™ v10.8 Software (BD Biosciences Inc.).
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9

Immunofluorescent Detection of dsRNA in IECs

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IECs from Mettl3ΔIEC mice as well as from the wild-type littermate control mice were isolated as described in previous section. Isolated IEC were centrifuged onto glass slides and fixed with 4% Paraformaldehyde for 30 min at room temperature. Subsequently, permeabilized and blocked with PBS containing 0.1% Triton-X-100% and 5% bovine serum albumin for 1 hr at room temperature. Double-stranded RNA (dsRNA) was labeled by a mouse monoclonal antibody J2 (Scisons) for 2 hr at room temperature, followed by incubation with anti-mouse IgG Alexa Fluor 594-conjugated antibody (Invitrogen) for 1 hr, and cells nuclei were visualized with 4,6-diamidino-2-phenylindole (DAPI, Invitrogen). All fluorescence images were analyzed via confocal imaging using Zeiss LSM880.
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10

Imaging Double-Stranded RNA in IECs

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IECs from Mettl3 ΔIEC mice as well as from the wild-type littermate control mice were isolated as described in previous section. Isolated IEC were centrifuged onto glass slides and fixed with 4% Paraformaldehyde for 30 min at room temperature.
Subsequently, permeabilized and blocked with PBS containing 0.1% Triton-X-100 and 5% bovine serum albumin for 1 h at room temperature. Double-stranded RNA (dsRNA) was labeled by a mouse monoclonal antibody J2 (Scisons) for 2 h at room temperature, followed by incubation with anti-mouse IgG Alexa Fluor 594conjugated antibody (Invitrogen) for 1 h, and cells nuclei were visualized with 4,6diamidino-2-phenylindole (DAPI, Invitrogen). All fluorescence images were analyzed via confocal imaging using Zeiss LSM880.
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