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4 protocols using n 1 pyrene maleimide

1

Labeled Lipid Membrane Protein Interactions

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Bis(maleimido)hexane (BMH) and 1,11-bismaleimido-triethyleneglycol (BM(PEG)3) were obtained from Thermo Scientific (Rockford, IL), N-(1-pyrene)maleimide (NPM), 5-((((2-iodoacetyl)amino)ethyl) amino)napthalene-1-sulfonic acid (IAEDANS) and tris-(2-carboxyethyl) phosphine hydrochloride (TCEP) from Invitrogen (Molecular Probes, Eugene, OR), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) and cholesterol from Avanti Polar Lipids (Birmingham, AL), dithiothreitol (DTT) 99% purity from Acros Organics (Morris Plains, NJ), guanidine hydrochloride (GdnHCl) (99% purity) from Fisher Scientific (Fair Lawn, NJ). All solvents used were of analytical grade.
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2

Labeled Lipid Membrane Protein Interactions

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Bis(maleimido)hexane (BMH) and 1,11-bismaleimido-triethyleneglycol (BM(PEG)3) were obtained from Thermo Scientific (Rockford, IL), N-(1-pyrene)maleimide (NPM), 5-((((2-iodoacetyl)amino)ethyl) amino)napthalene-1-sulfonic acid (IAEDANS) and tris-(2-carboxyethyl) phosphine hydrochloride (TCEP) from Invitrogen (Molecular Probes, Eugene, OR), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) and cholesterol from Avanti Polar Lipids (Birmingham, AL), dithiothreitol (DTT) 99% purity from Acros Organics (Morris Plains, NJ), guanidine hydrochloride (GdnHCl) (99% purity) from Fisher Scientific (Fair Lawn, NJ). All solvents used were of analytical grade.
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3

Expression and Purification of INF2-FFC

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Rosetta 2 DE3 Escherichia coli were used for the expression of INF2-FFC. After breaking the cells and getting the supernatant, a GST (glutathione S-transferase) column was first used to purify INF2. ProTEV was used after that for cleavage of GST. A gel filtration column was then used to purify INF2. The purified protein was dialyzed vs Hepes buffer (10mM Hepes pH=7.4, 50mM KCl, 1mM MgCl2, 1mM EGTA) and was stored at −81°C for further use. Rabbit skeletal muscle actin (RSA) was purified from acetone powder of muscles [20 (link)] and Mical oxidized actin (Mox-Actin) was generated as described by [18 (link)] N-(1-pyrene)-maleimide was obtained from Molecular Probes (Eugene, OR) or AnaSpec Inc. (San Jose, CA). RSA labeling with pyrene maleimide was carried out in thiol-free GB2 supplemented with 2 mM MgCl2 and 100 mM KCl, at 1:2.5 (actin:dye) molar ratio, for 1 h on ice. The resulting pyrene-labeled F-actin was pelleted, depolymerized (GB2), and gel-filtered on Superdex S200 16/60 column [32 (link)]. Mical-oxidized RSA (Mox-actin) was prepared and purified according to the published protocol [18 (link)].
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4

Labeling Histones and DNA with Fluorescent Probes

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N-(1-pyrene) maleimide, Alexa488 SE were obtained from Molecular Probes (Eugene, OR). DNase1, ATP, ADP, dithiotreitol (DTT), histone type III (histone mixture) and deoxyribonucleic acid (DNA) from calf thymus were purchased from Sigma Chemical Co. (St Louis, MO). Acetone dry powder was purchased from Pel-freeze Biologicals (Rogers, AR). Human recombinant H2A histone was bought from New England Bio Labs (Ipswich, MS). Viscous Aqua was purchased from Ursa BioScience (Abingdon, MD). Yeast cofilin was a generous gift of Prof. Emil Reisler, (University of California, Los Angeles, CA)
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