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Rhodamine conjugated poly 1 c

Manufactured by InvivoGen
Sourced in United States

Rhodamine conjugated Poly(I:C) is a synthetic analog of double-stranded RNA (dsRNA) that is labeled with the fluorescent dye rhodamine. It is used for the detection and tracking of dsRNA molecules in cell-based assays.

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2 protocols using rhodamine conjugated poly 1 c

1

Fluorescence Recovery After Photobleaching

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Alexa Fluor 647 conjugated
OVA (Thermo
Fisher Scientific), rhodamine conjugated Poly(I:C) (Invivogen), and
rhodamine conjugated HPMC–C12 were used to visualize
the diffusion of the cargo and gel. Samples were photobleached with
a 50 μm diameter for the region of interest (ROI). Different
tests (n = 5) were made for three different samples
from the same batch at different locations of the sample. A spot was
bleached with a pixel dwell time of 177.32 μs. A total of 500
postbleach frames were recorded at 1 frame/s to form the recovery
exponential curve. The diffusion coefficient was calculated as70 (link) where the constant γD = τ1/2/τD, with τ1/2 being the half-time of the
recovery, τD being the characteristic
diffusion time,
both yielded by the ZEN software, and ω being the radius of
the bleached ROI (25 μm).
The diffusivity of cargo in
PBS was calculated using the Stokes–Einstein law equation for
diffusion71 where kB is Boltzmann’s constant, T is temperature
in Kelvin, η is solvent viscosity, and R is
the solute hydrodynamic radius The diffusivity of cargo in a model covalent
PEG gel was calculated using the multiscale diffusion model (MSDM)
assuming 25 °C, a 5% volume fraction, and 35 nm mesh size.72 (link) The calculated values are comparable to experiment
diffusivities of similar sized cargoes found in the literature.73 (link)
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2

Immunofluorescence Imaging of Chondrocytes and Cartilage

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Human chondrocytes (P1) were plated at a density of 8 × 103 cells/cm2 on a glass cover slip in a 24-well plate. Rhodamine-conjugated poly(I:C) (Invivogen, San Diego, USA) or FITC labelled CpG ODN (Invivogen, San Diego, USA) was added and cells were incubated for 24 h and mounted with ROTI® Mount FluorCare DAPI (Carl Roth, Karlsruhe, Germany). Unconjugated rhodamine or FITC (Invivogen, San Diego, USA) at respective concentrations were used as negative control. Murine hip caps were obtained from 4 weeks old mice. Whole cartilage samples were incubated with Rhodamine-conjugated poly(I:C), FITC labelled CpG ODN, unconjugated rhodamine or FITC for 36 h. Again, DAPI was used as counterstain. Samples were embedded in TissueTek (Sakura, Alphen aan den Rijn, Netherlands). Each experiment was performed at least 3 times and all samples were analysed using a Zeiss confocal laser scanning system LSM 510 meta.
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