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25 protocols using anti βiii tubulin

1

DRG-ASC Co-culture Immunocytochemistry

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After 72 h of co-culture, DRG and ASCs were fixed with 4% paraformaldehyde for 10 min at room temperature. Subsequently, samples were blocked with 1% BSA (Sigma-Aldrich) in PBS and permeabilized with 0.2% Triton X-100 (Sigma-Aldrich) for 20 min at room temperature. Cells were stained with anti-βIII-tubulin (1:500, Abcam, rabbit monoclonal) and for 1.5 h at room temperature and subsequently with anti-rabbit Alexa Fluor 488-conjugated secondary antibody (1:1000, Thermo Fisher) for 1 h at room temperature in the dark. Cell nuclei were labeled with DAPI (Thermo Fisher) added to the secondary antibody solution at final concentration of 300 nM. Samples were examined at a 10× magnification under fluorescence microscope (Olympus IX81). For each DRG present at the end of the culture, one picture enclosing all the elongations was taken. Firstly, the number of surviving DRG in each condition was calculated. Subsequently, the total neurite length for each DRG was calculated with ImageJ software.
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2

Immunocytochemical Analysis of Neural Differentiation

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In this study, β-III tubulin was considered a neural
differentiation marker. After three times washing with
PBS, cells were fixed with cold 4% paraformaldehyde
for 15 minutes. Then, 0.1% Triton X-100 (Merck,
Germany) was employed for the increase of cell
permeability at room temperature for 30 minutes. The
cells were blocked with 1% BSA (Sigma-Aldrich,
USA) in T-PBS (Tween 20 in PBS) (T-PBS, Gibco,
UK) at room temperature for 1 hour. After that, the
cells were incubated at 4˚C overnight in the presence
of anti-β III tubulin (1:100 Dilution, Abcam, UK) as a
primary antibody. The next day, cells were rinsed three
times with T-PBS and incubated with a Cy3-conjugated
secondary antibody (1:300 Dilution, Abcam, UK)
at room temperature for 1 hour. Finally, cells were
washed with PBS, and nuclear staining was carried out
with 4’,6-Diamidino-2-Phenylindole (DAPI, Sigma-
Aldrich, USA). Photomicrography was done under a
fluorescent microscope (Olympus, Japan).
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3

Quantitative Analysis of Neuronal Morphology

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For the analysis of neurite morphology, treatments were performed the next day after seeding the neurons. Treatments were added to the fresh medium when the medium was partially replaced. MSN cultures were fixed with 4% paraformaldehyde after 10 days in vitro, after which they were permeabilizated with 0.1% Triton-X100 and blocked with 1% bovine serum albumin (BSA) before labelled with anti-DARPP-32 (1:400 Cell Signaling Technology, Danvers, MA, USA) to identify MSNs. Analysis of neuronal morphology was studied after double labelling with anti-βIII tubulin (1:1500; chicken ab41489, AbCam, Cambridge, UK). Secondary antibodies used to visualize labelling neurons were fluorescent Alexa antibodies (1:500; Thermofisher, Cambridge, UK, A-21206 and A-11042). Labelled neurons were visualized using a Zeiss LSM710 confocal microscope.
Neurite length was assessed using Fiji (ImageJ) software with the semiautomated plugin Simple Neurite Tracer [15 (link)]. The mean and standard errors of the measurements from at least three independent experiments were plotted.
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4

Western Blot Analysis of Cellular Markers

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Cell lysates were prepared with Laemmli buffer supplemented with protease inhibitors (complete tablet; Roche) and phosphatase inhibitors (PhosSTOP tablet; Roche) and analysed by Western blotting with the following primary antibodies: anti-γH2AX (Abcam); anti-PTB (Abcam); anti-nPTB (Abcam); anti-βIII Tubulin (Abcam); anti-Tyrosine Hydroxylase (Abcam); anti-GAPDH (Thermo Scientific); anti-MAP2 (Novusbio); anti-DROSHA (Cell Signaling); anti-DICER (Sigma); anti-H2AX (Millipore). Primary antibodies were revealed with peroxidase-conjugated goat anti-mouse or anti-rabbit antibodies (Jackson Immunoresearch Laboratories) and enhanced chemiluminescence system (Super Signal West Pico Pierce or Super Signal West Dura Extended). βIII Tubulin antibody was revealed with alkaline phosphatase-conjugated goat anti-chicken antibody (Santa Cruz) with a colorimetric assay.
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5

Immunoblot Analysis of Protein Targets

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Immunoblot analysis was performed as previously described (44 (link)). Antibodies were used as follows: anti-USP25 (Abcam, Cambridge, MA, USA; ab187156, 1:1000), anti-APP (Millipore, Billerica, MA, USA; MAB348, 1:1000), anti-Iba1 (Wako Pure Chemical, Osaka, Japan; 016-20001, 1:500), anti-GFAP (glial fibrillary acidic protein) (Cell Signaling Technology, Danvers, MA, USA; 3670, 1:1000), anti–β-III-tubulin (Abcam, ab18207, 1:1000), anti-HA (hemagglutinin) (Sigma-Aldrich, St. Louis, MO, USA; H6908, 1:1000), anti-ubiquitin (Santa Cruz Biotechnology, Santa Cruz, CA, USA; sc-8017, 1:500), anti–β-actin (Xmbcss, Xiamen, China; bc001, 1:2000), and horseradish peroxidase (HRP)–conjugated secondary antibodies (Thermo Fisher Scientific, 31430 or 31460; 1:3000).
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6

Neuroblastoma Immunofluorescence Staining

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Neuroblastoma was seeded on the glass bottom of 24-well plates and treated as described earlier. Cells were fixed in 4% paraformaldehyde for 15 min at room temperature. After washing with iced PBS twice, cells were permeabilized with 0.4% Triton X-100 and 2% BSA for 1 h at room temperature and then incubated with rabbit polyclonal anti-β-III tubulin (1:100, Abcam) overnight at 4 °C. After washing three times, cells were incubated with Alexa Fluor 594-conjugated goat anti-rabbit IgG (1:1000) secondary antibody for 1 h at room temperature. Nuclei were co-stained with DAPI (1:5000). Images were acquired with a Zeiss LMS 710 confocal microscope.
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7

Protein Expression Analysis in Synaptodendrosomes

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We examined the protein expression in synaptodendrosomes and other fractions from homogenate samples by Western blotting. Each band of homogenates was punched and lysed on ice in RIPA buffer (50 mM Tris [pH 7.6], 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, and 0.1% SDS) with a protease inhibitor cocktail (Cat. No. 11873580001; Roche, Basel, Switzerland). We centrifuged the lysates at 12,000 rpm at 4 °C for 10 min and quantified the proteins in the supernatants using a Pierce BCA Protein Assay Kit (Cat. No. 23225; Thermo Scientific, Waltham, MA, USA). We subjected equal amounts of proteins to SDS-PAGE and probed the membranes with specific antibodies including primary anti-tubulin (Cat. No. Ab195352; Abcam, Cambridge, UK), anti-GFAP (Cat. No. Ab174124; Abcam), anti-synaptophysin (Cat. No. Ab103328; Abcam), anti-PSD95 (Cat. No. Ab122340; Abcam), anti-NeuN (Cat. No. Ab104224; Abcam), and anti-βIII-tubulin (Cat. No. T8578; Sigma-Aldrich) at 1:1000 dilution overnight at 4 °C. We applied secondary antibodies conjugated with horseradish peroxidase to detect reactive bands; these antibodies were developed with the Amersham ECL Plus Detection Kit (GE Health, Chicago, IL, USA).
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8

3D Cell Immunostaining and Confocal Imaging

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Alvetex® Scaffold 3D samples were deparaffinised and rehydrated as previously described. Antigen retrieval was achieved by incubating samples in a 95 °C water bath for 20 min with citrate buffer anhydrous citric acid (Sigma-Aldrich, dissolved in (DI) water). Samples were then permeabilised with 0.1% Triton X-100 in PBS for 20 min and blocked with 1% goat serum (Sigma-Aldrich) and 0.01% Tween in PBS for 30 min. Primary antibody (anti-β—III—tubulin, anti-chondroitin sulphate (Abcam), or anti-brevican (Santa Cruz Biotechnology, Heidelberg, Germany)) was incubated with the samples overnight at 4 °C, followed by three washes in blocking buffer. Samples were then incubated with the relevant secondary antibody (Goat anti-rabbit Alexa Fluor® 488 or Goat anti-mouse Alexa Fluor® 488), along with the nuclear dye Hoechst 33,342 for a further 60 min before being washed 3 times for 15 min in blocking buffer and mounted using Vectashield fluorescence mounting media. Confocal images were obtained using the Zeiss 880 and Zeiss 510 confocal microscopes with Zen software, or the Leica SP5 confocal microscope with Leica Application Suite software.
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9

Immunocytochemistry of Cultured Cells

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For immunocytochemistry (ICC), cells after 24 h in culture with various treatments were processed for the immunostaining as previously reported15 (link). Briefly, the PFA fixed cells were permeabilised and blocked followed by overnight incubation with anti β-III tubulin (Abcam, 1:1000) and further with goat anti-mouse IgG conjugated to alexa Flour 488 (Molecular Probes, 1:500). Images were captured using a Motic AE31 microscope.
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10

Evaluating Apoptosis Signaling Pathways in Cell Models

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SFN-Cys and SFN-NAC were purchased from Santa Cruz Biotechnology (USA). PTX (Taxol, as a brand name) was obtained from Selleckchem (USA). Anti-Caspase-3, anti-β-actin, anti-α-tubulin, anti-Tau and protein A/G PLUS agarose were purchased from Santa Cruz Biotechnology (USA). Anti-βIII-tubulin and anti-Caspase-7 were purchased from Abcam (USA). Anti-Hsp70, anti-XIAP, anti-ERK1/2 and anti-pERK1/2 (Thr202/Tyr204) were obtained from Cell Signaling Technology (USA). Anti-Stathmin1 was obtained from Sangon Biotech Co.Ltd. (Shanghai, China). Anti-cleaved-PARP and anti-β-tubulin were purchased from Wanleibio (Shenyang, China). Annexin V-FITC/PI apoptosis assay kit was purchased from NeoBioscience (Shenzhen, China). Recombinant human Caspase-3 was purchased from Sino Biological Inc. (Beijing, China).
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