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252 protocols using vectashield medium

1

Ovarian Tissue Fixation and Imaging

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Ovaries were dissected in PBS and fixed in 4% PFA in PBS for 20 min, washed 3 × 10 min at RT, permeabilized in 1% Triton-X100 in PBS for 10 min, and DAPI stained (Sigma-Aldrich). Ovaries were washed in PBS and mounted in Vectashield medium (Vector Labs). S2 cells were allowed to settle on coverslips treated with Poly-L-Lysine (Sigma-Aldrich). After gentle washing, cells were fixed in 0.5% PFA in PBS for 20 min followed by staining with DAPI (Sigma-Aldrich), washed, and mounted in Vectashield medium (VectorLabs). Images were captured using an AxioImager microscope; an Apotome structured illumination system was used for optical sections (Carl Zeiss).
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2

Immunohistochemical Analysis of Tumor Tissue

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Tumor tissues were xed with 4% phosphate-buffered paraformaldehyde, dehydrated with 20% sucrose solution, and cut into 30 μm coronal sections with a cryostat. All the sections were washed 3 times with PBS, 10 min each. The primary antibody HBM45 (1:100) (diluted in 0.3% Triton X-100/PBS) was applied overnight at 4 °C. The sections were washed 3 times with PBS, 10 min each before the second antibody was applied. Sections were exposed to secondary antibody CY3(1:800) at room temperature. Finally, sections were mounted with Vectashield medium (Vector laboratories) and coverslipped. Results were viewed using a confocal laser scanning microscope (Lecai TCS SP2, German).
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3

Fixation and Staining of Transfected CHO Cells

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Fixation and staining of the transfected CHO cells were performed according to a standard protocol [55 (link)]. Cells were passaged onto coverslips (12 mm × 12 mm), washed with PBS the next day after transient transfection (by wild type ACTN4 or ACTN4 K255E mutant), and then fixed with 3.7% formaldehyde in PBS for 10 min at room temperature. Then, the cells were perforated with 0.1% Triton X-100 (5 min, room temperature) in PBS and incubated with 2 μM rhodamine-phalloidin solution (Sigma-Aldrich) for 15 min at 37 °C. Nuclei were stained with a Hoechst-33342 dye (5 μg/mL, 5 min incubation, room temperature) and mounted onto a slide using Vectashield medium (Vector Laboratories, Inc., Burlingame, CA, USA). The addition of each reagent (pre-dissolved in PBS) was followed by washing with PBS. Imaging was carried out using Olympus FV3000, × 63 lens, digital zoom. Lasers with excitation wavelengths of 405 nm (Hoechst-33342, emission maximum at 461 nm), 488 nm (GFP, emission maximum at 509 nm), and 561 nm (rhodamine-phalloidin, emission maximum at 565 nm) were used. Image analysis and processing were performed using open-source software ImageJ v1.53c (National Institutes of Health, USA, http://imagej.nih.gov/ij/).
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4

Immunofluorescence Assay for p65, FLAG, and GST

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MCF10A cells seeded on glass coverslips in 24-well plates (5.0 × 104 cells per well) were transfected as described above. Twenty-four hours after transfection, or after TNFα addition when stated, cells were fixed for 10 min in 4% paraformaldehyde (PFA). Coverslips were then sequentially incubated with PBS-Triton X-100 for 5 min, and with antibodies against p65 (SantaCruz Biotechnology #sc-372), FLAG (Sigma-Aldrich #F1804) or GST (Sigma-Aldrich #G7781) diluted in PBS–BSA 3% for 1 h. Secondary antibodies anti-rabbit-AlexaFluor-555 (Cell Signaling #4413) and anti-mouse-AlexaFluor-488 (Cell Signaling #4408) were next incubated in PBS–BSA 3% for 1 h. Nuclei were stained with DAPI and coverslips were mounted with Vectashield medium (Vector Laboratories, Cambridgeshire, UK). Results are presented as a representative example of three biologically independent repetitions of the experiment.
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5

Immunohistochemistry of SFO and OVLT

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The desired brain sections containing the SFO and OVLT were initially washed free‐floating in PBS. Next, brain tissue was permeabilized with 0.1% Triton X100 (Sigma) for 20 minutes at room temperature (RT), following further washing in PBS. Slices were then blocked in 5% normal donkey serum (NDS; Sigma) and 0.05% Triton X100 at RT for 30 minutes. A 48 hours incubation at 4°C in a PBS solution containing 0.05% Triton X100, 0.5% NDS and the primary antibodies rabbit anti‐GFP (1:1000, Abcam), and chicken anti‐vimentin (1:4000, Abcam). Following this incubation, slices were washed in PBS and transferred to PBS solution of secondary antibodies for 24 hours at 4°C; donkey anti‐rabbit Cy5 (1:800, Jackson ImmunoResearch) and donkey anti‐chicken Alexa 488 (1:800, Abcam). The secondary antibodies were then washed off in PBS and the slices were mounted on gelatine‐coated glass slides using VectaShield medium (Vector Laboratories, USA). Slices were then imaged on a confocal microscope (Leica SP5 upright) under the 20x objective. Z‐stacks were acquired in 3 µm steps and viewed as maximal intensity projections.
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6

Morphine Effects on vMSCs Angiogenesis

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vMSCs were seeded on cover glasses at the density of 1.5 × 104 cells/glass for 24 h. Then, the medium was changed with a fresh one containing 50 ng/ml of vascular endothelial growth factor (VEGF) for 7 days at 37° and 5% CO2, followed by morphine sulphate treatment for other 7 days at 37 °C and 5% CO2. At the end of the treatment, the samples were fixed in 4% paraformaldehyde in PBS for 30 min at 4 °C, followed by a permealization step in 0.1% Triton X-100 for 5 min at 4 °C. After some washes in PBS, the samples were covered with 2.5% bovine serum albumin (BSA) (Sigma-Aldrich, St. Louis, MO, USA) diluted in PBS (blocking reagent), for 30 min at room temperature (RT), followed by incubation in mouse anti-human CD31 antibody (Origene, Thermo Fisher Scientific, Monza, Italy) diluted 1:100 in blocking reagent, overnight at 4 °C. Then, the samples were washed in PBS and incubated for 1 h and 30 min at 37 °C with secondary antibody anti-mouse IgG–Cy3 conjugated (Sigma-Aldrich, St. Louis, MO, USA), diluted 1:2000 in PBS. Samples were rinsed with PBS, counterstained with DAPI and mounted in vectashield medium (Vector Laboratories, Inc., Burlingame, CA, USA). The fluorescence microscopy Eclipse E800 Nikon (Nikon, Tokyo, Japan) was utilized to observe the samples.
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7

Immunofluorescence Staining of Dopaminergic Neurons

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The immunofluorescence method used here was described in our previous research study42 (link). Thirty micrometer-thick cryostat sections were incubated with primary antibodies against rabbit anti-tyrosine hydroxylase (TH, 1:1000, Millipore, Temecula, CA, USA) in 1% BSA overnight at 4 °C. This is a specific marker of DA neurons. After the sections were washed with 0.01 M phosphate buffer, they were probed with the appropriate Cy3- and Alexa 488-conjugated secondary antibodies (1:500 for 4 h at room temperature (RT); Jackson ImmunoResearch, West Grove, PA, USA). Finally, the sections were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (Santa Cruz Biotechnology) and mounted in Vectashield medium (Vector Laboratories) before they were photographed using a Zeiss confocal microscope (Zeiss, LSM780).
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8

Murine Model of Retinal Neovascularization

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Retinal neovascularization was induced by the use of a well-established murine model of oxygen-induced retinopathy [20 (link)]. Neonatal mouse (C57BL/6) pups at postnatal day 7 (P7) with their nursing mothers were maintained for 5 days in 75% oxygen and then returned to room air (relative hypoxia) to produce retinal neovascularization at P12. PBS, scramble, KC21 peptides (25 μg), or Bev (10 µg) were then administered by intravitreal injection into mouse eyes at P12. The animals were sacrificed and the mouse eyes were enucleated at P17. Mouse eye cups were fixed in 4% paraformaldehyde for 2 h. The retinas were carefully separated from eye cups and then incubated with fluorescein-labeled isolectin-B4 (Life technologies) at 4 °C overnight. Samples were mounted with Vectashield medium (Vector Laboratories), and the isolectin labeling was examined by using the × 20 objective of a Leica TCS SP5 confocal microscope. Fluorescence volume measurements were recorded by creating image stacks of optical slices within lesions with QWIN software.
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9

Immunohistochemical Analysis of Choroidal Flat Mounts

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Immunohistochemistry was performed in RPE/choroidal flat mounts 14 days after laser injury. In brief, the anterior segment and the neural retina were removed, and the eye cups were fixed in 4% paraformaldehyde for 16 h and then washed with PBS and permeabilized in 0.25% Triton X-100 (ICN Biomedicals, Irvine, CA) for 30 min. The eye cups were then incubated in a blocking solution (1% bovine serum albumin + 5% NGS) for 1 h at room temperature, and then agglutinin to stain endothelial cells (1:400 dilution, Vector Laboratories, Burlingame, CA) and anti-collagen type I antibody (1:200 dilution, Abcam, Cambridge, MA, USA) were added and incubated at 4 °C overnight. The secondary antibody against the collagen type I antibody was goat anti-rabbit IgG antibody, Alexa Fluor 488 (1:500 dilution, Cell Signaling Technology, Boston, MA, USA). Samples were coverslipped with Vectashield medium (Vector Laboratories) and were examined under a Nikon A1R Confocal Microscope (Nikon TE2000, Nikon Instruments, Inc. Melville, New York, USA).
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10

Metaphase Arrest and Chromosome Preparation

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Human fibroblasts were arrested in metaphase with 1 μg/ml colcemid (2 h, 37°C) (KaryoMAX colcemid; Life Technologies), trypsinized, resuspended in serum-containing medium, centrifuged (1,500 rpm, 5 min), resuspended in 5 ml of 75 mM KCl, and incubated at RT (10 min). Seven drops of fresh 3:1 methanol-acetic acid fixative were then added, and cells were centrifuged (1,500 rpm, 5 min). After removing all but 100 μl of the fixative, cells were resuspended in 4.5 ml of fresh fixative added dropwise while vortexing at low speed and then incubated in fixative overnight (4°C), centrifuged (1,500 rpm, 5 min), resuspended in 1 ml of fresh fixative, pelleted in a microcentrifuge at top speed, washed with fixative, again pelleted in a microcentrifuge at top speed for 2 min, and resuspended in 250 μl fixative. One hundred microliters of suspension was dropped onto ethanol-precleaned microscope slides and dried in a fume hood (1 h). The slides were washed in ultrapure water and mounted in DAPI (4′,6′-diamidino-2-phenylindole)-containing Vectashield medium (Vector Laboratories) prior to deconvolution microscopy.
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