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Collagenase b

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Collagenase B is a laboratory reagent used for the enzymatic dissociation and isolation of cells from various tissues, including connective tissue. It is a mixture of proteolytic enzymes that specifically target and degrade collagen, a structural protein found in the extracellular matrix. This product facilitates the gentle and efficient release of cells from their surrounding matrix, enabling their subsequent isolation and use in various cell culture and research applications.

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248 protocols using collagenase b

1

Xenopus laevis Odorant Experiments

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Xenopus laevis frogs were purchased from Nasco (Fort Atkinson, WI, USA). The care and use of X. laevis frogs in this study was approved by the University of Miami Animal Research Committee and meet the guidelines of the National Institutes of Health. RNA transcription kits were from Ambion (Austin, TX, USA). Collagenase B was from Boehringer-Mannheim (Indianapolis, IN, USA). All other compounds and all odorants were from Sigma–Aldrich (St. Louis, MO, USA). CAS numbers for the odorants used in this study are listed in Supplementary Tables 1 and 2.
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2

Isolation and Culture of Guinea Pig Ventricular Myocytes

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Primary ventricular myocytes were isolated and cultured as previously described [39 (link),40 (link)]. Briefly, adult male and female Hartley guinea pig hearts were excised and Langendorff perfused with Tyrode solution containing (in mM): 118 NaCl, 4.8 KCl, 1 CaCl2, 10 Glucose, 1.25 MgSO4, 1.25 K2HPO4 (pH = 7.4) for 5 min. Ventricular myocytes were isolated by enzymatic digestion in Ca2+-free Tyrode solution containing Collagenase B (final concentration, 0.6 mg/mL; Boehringer Mannheim, Indianapolis, IN, USA) for an additional 6 min. The heart was subsequently perfused with high-K solution containing (in mM): 70 KOH, 50 L-glutamic acid (potassium salt), 40 KCl, 10 Taurine, 2 MgCl2, 10 Glucose, 10 HEPES, 5 EGTA, and 1% albumin (pH 7.4, with KOH) for 10 min. The digested heart tissue was placed in fresh high-K solution, minced into smaller pieces and triturated several times to dissociate the cells. The cell suspension was filtered through a mesh strainer and allowed to settle for 15–20 min. The pellet was resuspended in 10% M199 media and plated on laminin-coated coverslips. Cells were patched 6–8 h after plating.
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3

Isolation and Analysis of Lung Lymphocytes from LCMV-Infected Mice

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For the chronic LCMV infection experiments, at day 15 after treatment initiation, mice were euthanized and blood, spleen, and lungs were collected and processed for lymphocyte isolation and staining for flow cytometry analyses. Spleen was also processed and analyzed for intracellular cytokine staining and plaque assay. For the acute LCMV infection experiment, mice sacrifice, spleen collection and lymphocyte isolation were performed at day 8 post-infection. Tissues from LCMV infected mice were processed as previously reported (13, 31 (link)). Briefly, for isolation of lung ymphocytes, lungs were first perfused by injecting in the right ventricle with 10 mL of ice-cold PBS, then removed and trimmed with scissors. Following incubation in 0.25 mg of collagenase B (Boehringer Mannheim)/mL and 1 U/mL of DNase (Sigma) at 37°C for 60 minutes, the digested lungs were passed through a cell strainer and centrifuged, and the pellet was resuspended in 5 to 10 mL of 44% Percoll (Sigma). This suspension was underlaid with 67% Percoll and spun at 850 × g for 20 minutes at room temperature, the lung lymphocyte population was harvested from the interface, and red blood cells were lysed using 0.83% ammonium chloride.
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4

Isolation of Adult Rat Cardiac Myocytes

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Adult Sprague‐Dawley rats were euthanitized, and their ventricular cardiac myocytes were isolated using previously described methods.9 Briefly, anesthesia (isoflurane, 5%) and heart excision were followed by 5 minutes of perfusion (37°C) with minimal essential medium (MEM, GIBCO Life Technologies) gassed with 95% O2/5% CO2 before collagenase B (0.5 mg/mL, Boehringer Mannheim, Mannheim, Germany) and protease (0.02 mg/mL, Sigma, St. Louis, MO) were added to dissociate myocytes. Isolated myocytes were incubated (37°C) in the same MEM solution, washed, and held at 100 μmol/L Ca2+ until use. The care of the animals and procedures were approved by the University of California, Davis Animal Research Committee in accordance with the NIH Guide for the Care and Use of Laboratory Animals. After saponin‐induced permeabilization (50 μg/mL for 3 minutes) myocytes were then perfused for 10 minutes with internal solution containing 50 nmol/L free [Ca2+].19 Experiments were performed at room temperature (25°C).
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5

Xenopus Oocyte Preparation and Injection

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Oocytes were obtained by partial ovariectomy of female Xenopus Laevis (Xenopus Express, Beverly Hills, FL), anesthetized with 2.0 g/l methanesulfonate salt of 3-aminobenzoic acid ethyl ester (Sigma, St. Louis, MO). Follicle cells were removed in OR-2 Ca2+-free medium (in mM 82.5 NaCl, 2.4 KCl, 1.0 MgCl2, 5.0 HEPES-Na, pH 7.5) with addition of 1 mg/ml collagenase B (Boehringer Mannheim, Indianapolis, IN). Defolliculated oocytes were washed 4 to 5 times with Ca2+-free OR-2. Healthy oocytes in stages V to VI were collected under a microscope and maintained at 18oC overnight in ND96 solution (in mM, 96.0 NaCl, 2.0 KCl, 1.8 CaCl2, 1.0 MgCl2, 2.5 sodium pyruvate, 5.0 HEPES-Na, pH 7.5, 100 μg/ml streptomycin, and 100 U/ml penicillin). Oocytes were injected with indicated amount of cRNA in a final volume of 50 nl using a Nanoliter 2000 injector (World Precision Instruments, Inc., Sarasota, FL). Oocytes were incubated at 18oC in ND96 solution with pyruvate and antibiotics. The medium was changed every day, and oocytes were tested 48–96 hr after cRNA injection.
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6

Exposure of Cardiomyocytes to Electromagnetic Fields

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Rat cardiomyoblasts (H9C2 cell line) were maintained in a growth medium with Dulbecco’s Modified Eagle Medium (DMEM) Glutamax supplemented with 10% fetal bovine serum and 1% penicillin–streptomycin at 37 °C in 5% CO2. The cultured H9C2 cells were grown to 80–90% in a Petri dish and were exposed to EMFs for 24 h, 48 h, and 72 h. Cardiac myocytes were isolated from male 10-week-old C57BL6 mice using the method described by Xu et al. [23 (link)]. Briefly, hearts were perfused by the Langendorff method with HEPES-buffered Earle’s balanced salt solution (GIBCO-BRL) supplemented with 6 mM glucose, amino acids and vitamins (buffer A), and then with buffer A containing 0.8 mg/mL collagenase B (Boehringer-Mannheim, Mannheim, Germany) and 10 μM CaCl2. The enzyme solutions were filtered (2-μm pores) and recirculated through the heart until the flow rate doubled (12–20 min); the left ventricle was then removed and minced in collagenase containing buffer A. Thereafter, the tissue pieces were transferred to fresh (enzyme free) buffer A supplemented with 1.25 mg/mL taurine, 5 mg/mL BSA (Sigma-Aldrich, St. Louis, MO, USA), and 150 μM CaCl2 and mechanically dissociated by gentle trituration. The resulting suspension was filtered and isolated cells were obtained by sedimentation. The cultured primary cardiomyocytes were exposed to 915 MHz EMFs for 1 h, 3 h, and 24 h.
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7

Isolation and Culture of Rabbit Chondrocytes

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Normal articular cartilage was collected from five white New Zealand buck rabbits, which were anesthetized with overdose of propofol and euthanized using Potassium chlorate 60 mg/Kg. After knee joint surgery, the pieces of articular cartilage were dissected and separated from the underlying bone and connective tissues. The pieces were washed three times with PBS 1× and 5% penicillin/streptomicin. The extracted cartilage was digested in a solution of 2 mg/mL Protease Type XIV. Bacterial from (Streptomyces griseus) (Sigma Aldrich, St Louis, MO, USA) in PBS 1× for 1.5 h and 1.5 mg/mL collagenase B (Roche, Meylan, France) in basic medium DMEM at 37 °C overnight. This suspension was centrifuged at 1200 rpm for 8 min. to collect the chondrocytes and was washed with basic medium DMEM. The chondrocytes were cultured in DMEM/F12 (1:1 with 15% FBS plus 1% antibiotic mixture of penicillin/streptomycin) at a density of 1 × 105 cells/mL and incubated in a humidified atmosphere of 5% CO2 at 37 °C. Culture medium was changed every two days and each passage was made when the confluence reached between 80–90%. We only used the second passage of cells in all experiments in order to avoid loss of chondrocyte phenotype [92 ].
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8

Isolation of Lung Epithelial Cells

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Lungs from Rptorf/f; ShhCre/+, Tfamf/f; ShhCre/+and Cox10f/f; ShhCre/+ mice and their littermate controls were dissected at the indicated time points, placed in the digestion solution (1.2 U/ml dispase (BD Biosciences, Cat# 354235), 0.5 mg/ml collagenase B (Roche, Cat# 11088815001) and 50 U/ml DNase I (QIAGEN, Cat# 79254)) and rocked at 37 °C for 1 h to release individual lungs cells. An equal volume of culture medium (DMEM (Mediatech, Cat# 10-013-CV) with 10% FBS (Gibco, Cat# 10437-028), 2x penicillin/streptomycin (Gibco, Cat# 15070-063) and 1x L-glutamine (Gibco, Cat# 25030-081)) was added to the digested lung samples, which were filtered through 40 µm cell strainers. After centrifugation at 600 × g for 10 min, the cell pellets were resuspended in 200 µl purification buffer (Phenol red-free DMEM with 0.2% BSA and 2% FBS). Biotin-conjugated EpCAM antibody (anti-CD326 (EpCAM), 1:100, eBioscience, Cat# 13-5791-82; RRID:AB_1659713) and Dynabeads M-280 Streptavidin (Invitrogen, Cat# 11205D) were added to the samples and incubated at 4 °C for 1 h with shaking. Epithelial cells were captured using Dynabeads magnets following the manufacturer’s instructions. Purified lung epithelial cells were used for qPCR, ATP measurement and Western blotting analysis.
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9

Cardiac Cell Dissociation and Staining

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Cardiac cultures were dissociated using 0.25% trypsin/EDTA (Gibco/BRL) for 5 min at 37 °C to quickly lift the monolayer cells off the plate, then a single cell suspension was achieved with a solution of collagenase/DNase (PBS with 20% serum, 10 mg ml−1 collagenase A (Roche, cat#11088785103), 10 mg ml−1 collagenase B and 10 μg ml−1 DNase I (Roche, cat# 1184932001), 5–10 min at 37 °C. Cells were stained with live/dead stain (Thermofisher, cat# L34955) for 20 min, fixed in 2% PFA and permeabilised in 0.5% saponin (Sigma, cat# S7900). After a wash in PBS/0.1% saponin, cells were stained with anti-cTNT (Abcam, clone 1C11) primary antibody and Alexa-488 donkey anti-mouse (Thermofisher, cat# A21202) secondary antibody.
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10

Ultrastructural Analysis of Cartilage Micromass

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Knee cartilage was dissected from newborn WT and ERp57 cKO mice and incubated overnight in DMEM supplemented with 1 mg/mL Collagenase B (Roche, Mannheim, Germany) and 1 mM cysteine. Next, 400,000 of these isolated cells were pipetted as 20 µL droplets of cells in DMEM to form micromass cultures in a 24-well plate. After 3 h, 1 mL DMEM complete supplemented with ABCP was added to the micromass cultures, which were then cultivated for 7 days at 37 °C and 5% CO2. Micromasses were then fixed overnight with 2% (v/v) PFA and 2.5% (v/v) glutaraldehyde in 100 mM cacodylate buffer pH 7.4 at 4 °C. Micromasses were washed in PBS and postfixed in 0.5% (v/v) osmium tetroxide and 1% (w/v) potassium hexacyanoferrate (III) in 0.1 M cacodylate buffer at 4 °C for 2 h. After another washing step with distilled water, the samples were dehydrated in an ascending ethanol series and subsequently incubated in propylene oxide (2 × 15 min). Micromasses were embedded in Epon and ultrathin sections were cut with an ultramicrotome. Sections were collected on copper grids and negatively stained with 2% uranyl acetate for 10 min. A Phillips EM-410 electron microscope was used to take electron micrographs at 60 kV using imaging plates (Ditabis, Pforzheim, Germany).
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