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8 protocols using nf κb p65

1

Western Blot Analysis of Cellular Signaling

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The lysates of treated cells were reconstituted with loading buffer and run by sodium dodecyl sulfate polyacrylamide gel electrophoresis. Nitrocellulose membranes (Millipore, USA) containing the transferred proteins were soaked in blocking buffer for 2 h and then separately incubated at 4°C overnight with the following primary antibodies: SelS (Sigma, USA), endothelial nitric oxide synthase (eNOS; Proteintech, Wuhan, China), p-c-jun (Proteintech, Wuhan, China), c-jun (Proteintech, Wuhan, China), p-p38 MAPK (Abcam, USA), p38 MAPK (Abcam, USA), inhibitory kappa B α kinase β (IKKβ, CST, USA), p-IKKβ (CST, USA), inhibitory kappa B α (IκBα, CST, USA), p-IκBα (CST, USA), NF-κB p65 (Bioworld, USA), Lamin B (Proteintech, Wuhan, China), and GAPDH (Proteintech, Wuhan, China). After washing for 30 min, the Nitrocellulose membranes were then incubated with horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature. The membranes were subsequently treated with enhanced chemiluminescence (ECL, Thermo Scientific, USA) to develop the protein bands, and images were captured using the ChemiDoc MP Imaging System (Bio-Rad, USA). Quantitative analysis of the band intensities was performed with the Quantity One 4.52 software program (Bio-Rad, USA). Lamin B and GAPDH were used as internal controls.
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2

Western Blot Analysis of Cellular Signaling

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The cells were lysed in Cell Lysis Buffer for Western and IP (Beyotime) and incubated at 4 °C for 15 min. Protein extracts were separated by SDS-PAGE and then transferred to polyvinylidene fluoride membranes before overnight incubation with primary antibodies directed against Asb2 (Santa Cruz), IκBα (Cell Signaling Technology, 1:600 dilution), NF-κB-p65 (BioWorld), Caspase 3 (Proteintech Group, 1:2000 dilution), NICD (abcam), Hes1 (abcam), lamin (Wuhan Boster Biological Technology) or GAPDH (Wuhan Boster Biological Technology) at 4 °C. The membrane was washed with 0.1% Tween-20 in Tris-buffered saline and then incubated with horseradish peroxidase-conjugated anti-rabbit or anti-goat IgG secondary antibody (Wuhan Boster Biological Technology) for 1 h at room temperature. The immunoreactive bands were visualized using an ECL Western blotting detection kit (Thermo, Waltham, MA, USA) with light-sensitive film.
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3

Gene Expression Analysis in TLR7 Signaling

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An M-MLV reverse transcription kit (Takara Bio, Inc., Shiga, Japan), TaqE (Takara), dNTP (Takara), DNA marker (Takara), SYBR-Green mix (Bio-Rad, Hercules, CA, USA), agarose (Promega Corporation, Madison, WI, USA), diethylpyrocarbonate (Sigma, St. Louis, MO, USA) and TRIzol (Invitrogen Life Technologies, Carlsbad, CA, USA) were used in this study. Primers were synthesized by Sangon Co., Ltd. (Shanghai, China) as follows: GAPDH (201 bp) forward, 5′-CTCATGACCACAGTCCATGC-3′ and reverse, 5′-CACATTGGGGGTAGGAACAC-3′; TLR7 (117 bp) forward, 5′-ACGCTTTCTTTGCAACTGTG-3′ and reverse, 5′-TTTGTGTGCTCCTGGACCTA-3′; and MYD88 (136 bp) forward, 5′-TGGTGGTTGTTTCTGACGAT-3′ and reverse, 5′-GGAAAGTCCTTCTTCATCGC-3′. NF-κB-P65 and p-c-jun rabbit monoclonal primary antibodies were purchased from Bioworld Technology Co., Ltd (Nanjing, China), while IgG goat polyclonal secondary antibody was purchased from the Beijing Zhongshan Golden Bridge Biotechnology Co., Ltd. (Beijing, China) and cell lysis buffer was bought from Beyotime (Nanjing, China). The western blot analysis was conducted at the Key Laboratory of Antiviru of the Ministry of Education. Enzyme-linked immunosorbent assay (ELISA) kits, IL-1β, TNF-α and IL-6 were obtained from Bender MedSystems (Vienna, Austria).
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4

miRNA Target Validation in HEK 293T

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For miRNA target validation studies, HEK 293T cells were seeded in 24-well plates at 2×10 4 and NF-κB p65 (Bioworld Technology, St. Louis Park, MN, USA). After primary antibody incubation, blots were washed three times with Tris-buffered saline containing 0.1% Triton X (TBST), incubated with appropriate secondary antibodies for 1 h at room temperature, and washed three times in TBST.
Immunolabeling was visualized using Electro-Chemi-Luminescence (ECL) reagent.
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5

Baicalin and 5-FU Combination Therapy

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Baicalin with 98% purity was purchased from National Institute for the Control of Pharmaceutical and Biological Product (Hangzhou, China); 5-FU was obtained from Yuanye Biological Technology (Shanghai, China). Baicalin and 5-FU were dissolved in dimethyl sulfoxide (DMSO). TGF-β1 was purchased from PeproTech and treated cells for 12 h in this study. Antibodies for Smad3, p-Smad3, Smad2, p-Smad2 and Smad4 were purchased from Cell Signaling Technology (Boston, MA, USA). Antibodies for Smad7, Akt, p-Akt, Cyclin B1, Cyclin D1, P21, P53, Parp-1, Caspase 3, XIAP, Survivin and β-actin were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA. USA). Antibodies for CD133, CD44, Nanog, OCT4, SOX2, Bcl-2, Bax, P27, Caspase8, Caspase9, Snail, Twist and Slug were obtained from Proteintech (Rosemont, IL, USA). Antibodies for TGF-β1, N-Cadherin, E-Cadherin, Vimentin, Cytokeratin 18, Claudin 1, NF-κB-p65 and Cyclin E1 were purchased from Bioworld Technology Inc. (St Louis, MN, USA).
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6

Protein Extraction and Western Blot Analysis

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Cells or colon tissues were subjected to the NE-PER™ nuclear and cytoplasmic protein extraction kit (Thermo Fisher Scientific, Rockford, IL, USA) for fractionation of nuclear and cytoplasmic proteins as previously described [24 (link)]. The total protein quantity in the homogenate was determined by the Bradford assay [27 (link)]. The isolated proteins were then separated by electrophoresis on sodium dodecyl sulfate-polyacrylamide gel and subsequently transferred onto the polyvinylidene difluoride membrane (Merck Millipore Corp., Billerica, MA, USA). The proteins on the membrane were detected by the primary antibodies against iNOS (Enzo Life Sciences), COX-2 (Cell Signaling Technology, Danvers, MA, USA), NF-κB (p65; (Bioworld Technology, St. Luis. MN, USA), β-actin, and lamin B (Santa Cruz Biotechnology, Dallas, TX, USA), and by the appropriate secondary antibodies conjugated with HRP. The antibody-bound proteins were developed using SuperSignal™ West Pico Chemiluminescent Substrate (Thermo Fisher Scientific) and digitalized using ImageQuant™ Las 4000 Mini (GE Healthcare Life Sciences, Little Chalfont, UK). The protein bands were densitometrically analyzed by Image Studio Lite version 5.2 (LI-COR Biotechnology, Lincoln, NE, USA).
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7

α-Hederin Inhibits IL-6-Induced Signaling

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α-Hederin of purity over 99% was provided by Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). NF-κB specific inhibitor pyrrolidine dithiocarbamate (PDTC), JAK2/STAT3 signaling specific inhibitor AG490, and ERK specific inhibitor U0126 were obtained from Selleck Chemicals (Houston, TX, USA). Dimethyl sulfoxide (DMSO) was used to dissolve the above compounds for experiments, and single treatment with DMSO was used as negative control. Recombinant human IL-6 cytokine was obtained from Solarbio Life Science (Beijing, China). The primary antibodies used for Western blot analyses against cyclin B1, CDK1, Bcl-2, Bax, Cyt c, cleaved-caspase-9, cleaved-caspase-3, cleaved-caspase-8, cleaved-PARP, NF-κB(p65), p-IκBα, IκBα, p-IKKα, IKKα, p-ERK, ERK, COX IV, lamin B1, and GAPDH were purchased from Bioworld Technology, Inc. (MN, USA).
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8

miRNA Target Validation in HEK 293T

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For miRNA target validation studies, HEK 293T cells were seeded in 24-well plates at 2×10 4 and NF-κB p65 (Bioworld Technology, St. Louis Park, MN, USA). After primary antibody incubation, blots were washed three times with Tris-buffered saline containing 0.1% Triton X (TBST), incubated with appropriate secondary antibodies for 1 h at room temperature, and washed three times in TBST.
Immunolabeling was visualized using Electro-Chemi-Luminescence (ECL) reagent.
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