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7 protocols using ab32107

1

Embryonic Heart Development Analysis

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Freshly-dissected embryo bodies were observed under a stereomicroscope. Parts of the embryos and embryonic hearts were fixed overnight with 4% paraformaldehyde (PFA) at 4°C and then embedded in paraffin wax or optimal cutting temperature compound (OCT). The paraffin sections were stained with H&E for detection of the cardiac structure. To analyze cell proliferation and detect apoptosis in the cardiac OFT, sections from HO or WT individual embryos at E13.5 were stained with anti-PHH3 (ab32107, Abcam, Cambridge, UK) (45 (link)) and in situ Cell Death Detection Kit, Fluorescein (11684795910, Roche, Mannheim, Germany). For detection of the cNNCs, the OFT-containing sections were incubated with anti-Sox10 primary antibody (ab227680, Abcam, Cambridge, UK), washed with phosphate buffered saline solution with 0.1% Tween 20 (PBST), and then incubated with a secondary antibody [goat antirabbit IgG (H + L) (A27039, Invitrogen, Carlsbad, CA, USA)] in fluorescence immunohistochemical assay. Finally, slides were mounted using DAPI medium (SL1841, Coolaber, Beijing, China) and then three discontinuous sections per embryo subjected to fluorescence microscopy on a Leica microscope (DM6000B, Leica, Germany). Signals were quantified using (ImageJ software), with 10 fields that were randomly selected from three cardiac sections used to quantify positive cell number from the fluorogram.
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2

Planarian RNA Expression Analysis

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For RNA expression analysis in whole planarians, NBT/BCIP and Fluorescent in situ hybridizations were performed as previously described (73 (link)). Following hybridization, DIG-probes were detected with antibodies in MABT containing 5% horse serum appropriate for NBT/BCIP in situ hybridization (Roche 16646822, anti-DIG-AP, 1:1000) or for FISH (Roche 28557000, anti-DIG-POD, 1:1000 or Roche 20052220, anti-FLCN-POD, 1:1000). NBT/BCIP developed animals were stored in 80% glycerol overnight prior to mounting, while FISH animals were soaked overnight in a modified ScaleA2 solution (40% glycerol, 2.5% DABCO, 4M urea) prior to mounting and imaging. Anti-phospho-histone H3 (Ser10)(H3P) antibody (1:500, abcam, ab32107) and Alexa-conjugated goat anti-rabbit secondary antibodies (1:1000, abcam, ab150086) were used to stain mitotic cells.
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3

Immunohistochemical Analysis of Cardiac Cell Markers

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AMTs were fixed using 4% paraformaldehyde/PBS for 30 minutes and embedded in 13% polyacrylamide gel. 150 μm thick sections were made using a vibratory microtome and stained for cardiac troponin-T (TNNT2, MS-295-P, Thermo Scientific, 1:150 dilution), alpha sarcomeric actinin (α-Actinin, EA53, Sigma, 1:200 dilution), connexin-43 (GJA1, ab11369, Abcam, 1:100 dilution), active caspase-3 (ab2302, Abcam, 1:100 dilution), NKX2-5 (sc-8697, Santa Cruz, 1:50 dilution), and phospho histone H3 (P-histone3, ab32107, Abcam, 1:100 dilution) primary antibodies and Alexa Fluor secondary antibodies. Stained samples were scanned using a confocal microscope and used to generate 3D projection images of the tissue sections in ImageJ. Proliferation and apoptosis were assessed by calculating the percentage of total nuclei positive for phospho histone H3 and active caspase-3, respectively. Myotubes were identified as actinin positive cells containing 5 or more nuclei, since human CMs can contain up to 4 nuclei70 (link).
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4

Histology and Immunostaining of MPNST Tumors

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Sections from Roc or vehicle-treated MPNST tumors were prepared and stained with hematoxylin and eosin (H&E) or immunostained for p-histone H3(Ser10) (pH3; ab32107, Abcam) or CC3 (#9664, Cell Signaling) as previously described (32 (link)).
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5

Immunofluorescence Staining in Planarians

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Immunofluorescence staining was performed as described before41 . Different treatments were used for different antibodies. Following antibodies were used: Phospho-histone H3 (Ser10) (H3p) (1:1000, Abcam, ab32107). Planarians were sacrificed in 5% N-acetyl cysteine (NAC) for 5 min at room temperature. After being bleached with 6% H2O2 overnight, animals were washed with PBSTx (0.3% Triton X-100). After 2 h of blocking with 1% BSA, animals were incubated with primary antibody overnight, then washed with PBSTx more than six times and 1 h each. Blocking with 1% BSA for 1 h was performed before the incubation of the fluorescent secondary antibody cy3-labeled goat anti-rabbit IgG (1:1000, Beyotime, A0516) overnight. After extensive wash with PBSTx for more than 6 h, the animals were mounted with 80% glycerol containing Hoechst 33342 (10 µg/ml, Invitrogen, H3570). Quantification of fluorescent signals was analyzed by ImageJ software (V1.5) as previously described43 (link).
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6

Comprehensive Antibody Profiling for Cellular Studies

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Primary antibodies were: rabbit polyclonal anti-Tau (Dako #A002401, 1:500), mouse monoclonal anti-FlagM2 (Sigma #F1804, 1:1000), mouse monoclonal anti-GFP (Roche #11814460001, 1:5000), sheep polyclonal anti-tubulin (ATN02, Cytoskeleton, 1:500), rat monoclonal anti-tubulin (CBL270, Millipore, 1:1000), rabbit anti-cleaved-caspase-3 (Cell Signaling #9661S, 1:1000), mouse anti-PH3 (phospho-Ser10, clone 3H10, 1:1000), rabbit anti-PH3 (phospho-Ser10+Thr11, ab32107, Abcam, 1:1000), rhodamine phalloidin (Invitrogen #R415, 1:3000) and rabbit polyclonal anti-dTau (1:1000) (kind gift from D. St Johnston) (Doerflinger et al., 2003 (link)).
Secondary antibodies were Alexa-Fluor-488, Alexa-Fluor-633 (Molecular Probes, Invitrogen), Cy3 and Cy5 (Jackson ImmunoResearch), all diluted 1:500.
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7

Planarian RNA Expression Analysis

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For RNA expression analysis in whole planarians, NBT/BCIP and Fluorescent in situ hybridizations were performed as previously described (73 (link)). Following hybridization, DIG-probes were detected with antibodies in MABT containing 5% horse serum appropriate for NBT/BCIP in situ hybridization (Roche 16646822, anti-DIG-AP, 1:1000) or for FISH (Roche 28557000, anti-DIG-POD, 1:1000 or Roche 20052220, anti-FLCN-POD, 1:1000). NBT/BCIP developed animals were stored in 80% glycerol overnight prior to mounting, while FISH animals were soaked overnight in a modified ScaleA2 solution (40% glycerol, 2.5% DABCO, 4M urea) prior to mounting and imaging. Anti-phospho-histone H3 (Ser10)(H3P) antibody (1:500, abcam, ab32107) and Alexa-conjugated goat anti-rabbit secondary antibodies (1:1000, abcam, ab150086) were used to stain mitotic cells.
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