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30 protocols using anti gapdh

1

Western Blot Analysis of Apoptosis Markers

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Protein samples were separated on 10% sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene fluoride membranes (PVDF) (Millipore, Billerica, MA) for protein bands detection. The membranes were blocked in 5% nonfat milk. Primary antibodies including anti-GAPDH (1:2000, Abmart, Shanghai, CHN), anti-BCL2 (1:500, Abcam, Cambridge, UK), anti-Caspase 9 (1:1000, Cell Signaling Techonolgy, MA, USA), anti-cleaved-Caspase 9 (1:500, Cell Signaling Techonolgy, MA, USA), anti-Caspase 3 (1:1000, Abcam, Cambridge, UK), and anti-cleaved-Caspase 3 (1:1000, Abcam, Cambridge, UK) were used for incubation overnight at 4 °C. The membranes were incubated with HRP-conjugated secondary antibody (1:3000, Jackson Immuno Research, PA, USA) at room temperature for 1 h and the protein bands were detected by Pierce Fast Western Blot Kit (Thermo Fisher Scientific, MA, USA).
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2

Western Blot Analysis of Apoptosis and Signaling

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Cell pellets were lysed in RIPA buffer containing 50 mM Tris pH 8.0, 150 mM NaCl, 0.1% SDS, 0.5% deoxycholate, 1% NP-40, 1 mM DTT, 1 mM NaF, 1 mM sodium vanadate, 1 mM PMSF (Sigma), and 1% protease inhibitors cocktail (Merck). Protein extracts were quantitated and loaded on 8% to 12% sodium dodecyl sulfate polyacrylamide gel, electrophoresed, and transferred onto a PVDF membrane (Millipore). The membrane was incubated with primary antibody, washed, and incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (Pierce). Detection was performed by using a chemiluminescent Western detection kit (Cell Signaling Technology). The antibodies used were Anti-caspase-3, Anti-caspase-9, Anti-PARP, Anti-pSTAT3 (Y705), Anti-Jak2, Anti-pJak2 (Y1007/Y1008), Anti-pSTAT3 (S727), Anti-STAT1, Anti-pSTAT1 (Y701), Anti-STAT5, and Anti-pSTAT5 (Y694) (Cell Signaling Technology), Anti-Lamin B, Anti-Cyclin D1 (Santa Cruz Biotechnology), Anti-Mcl-1, Anti-STAT3 (Proteintech), and Anti-GAPDH (Abmart) antibodies.
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3

Western Blot Analysis of Autophagy and Signaling Pathways

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Cells or tumor tissue extracts were digested in RIPA lysis buffer (Beyotime, Shanghai, China) containing protease and phosphatase inhibitors (Thermo Scientific, Rockford, IL). The proteins were quantified using a BCA protein assay kit (Thermo Scientific) according to the manufacturer's instructions. The total protein extracts were separated by 10% SDS‐PAGE and transferred to polyvinylidene difluoride membranes. The membranes were incubated with primary antibodies, including anti‐LC3B (Abcam, Cambridge, UK), anti‐ERK1/2 (Cell Signaling Technology CST, Danvers, MA), anti‐p‐ERK1/2(CST), anti‐mTOR (CST), anti‐p‐mTOR (CST), anti‐p85 (Abcam), anti‐p‐p85 (Abcam), anti‐Akt (CST), anti‐p‐Akt (CST), anti‐p70S6K (CST), anti‐p‐p70S6K (CST), anti‐p62 (CST), anti‐Craf (Abcam), anti‐p‐Craf (Abcam), anti‐Atg7 (CST), anti‐GAPDH and β‐actin (Abmart, China) overnight at 4°C. Then, the membranes were incubated with horseradish peroxidase (HRP)‐conjugated secondary antibodies (Abcam) for 1 h at room temperature, and the protein bands were detected with a ChemiDoc XRS+ and Image Lab TM software (Bio‐Rad, Hercules, CA).
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4

Antibody-based Protein Detection Assay

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This experiment was carried out as previously described25 (link). The following antibodies were used: anti-TET2 (Diagenode, C15200179), anti-caspase-4 (MBL, M029-3), anti-GAPDH (Abmart, M20005M), anti-LaminB1 (Proteintech, 66095-1-Ig), anti-Flag (Abmart, M20008M). anti-mouse secondary IgG antibody (SAB, 3032), anti-rabbit secondary IgG antibody (SAB, 3012). All pictures were taken by digital Bio-Rad machine (ChemiDocTM) and processed by its built-in software (image lab).
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5

Protein Extraction and Immunoprecipitation Protocol

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Cells were lysed with RIPA buffer containing protease and phosphatase inhibitor cocktails (Roche, Basel, Switzerland), as previously described [16 (link)]. Equal amounts of protein were separated by SDS–PAGE and transferred to membranes. For immunoprecipitation, cell lysates were incubated with antibodies and Protein A/G Magnetic Beads (HY-K0202, MedChem Express), followed by western blotting. Western blotting was performed as previously described [19 (link)] with specific primary antibodies and horseradish peroxidase-conjugated secondary antibodies, followed by visualization using chemiluminescence (DNR Bio-Imaging Systems, Jerusalem, Israel). The antibodies used were as follows: anti-cyclin G2 (DF2284, Affinity Biosciences), anti-Flag (M20008XS, Abmart), anti-PP2Ac (2038 T, Cell Signaling Technology), anti-STAT1 (14994S, Cell Signaling Technology), anti-p-STAT1 (Y701) (9167S, Cell Signaling Technology), anti-lamin B1 (sc-6216, Santa Cruz), anti-β-tubulin (M30109XS, Abmart), anti-GAPDH (M20006F, Abmart), and anti-IgG (3900S, Cell Signaling Technology).
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6

Western Blot Antibody Validation

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For Western blot, the following antibodies were used: anti-KMT9α (#27630, lot 20062017, Schüle Lab, Freiburg, Germany, 1:500, rabbit), anti-KMT9β (#28358, lot 27022018, Schüle Lab, 1:500, rabbit), anti-PTEN (CST#9552, lot 3 08/2019, Cell Signaling, 1:500, rabbit), anti-TRP53 (#LIN-P956, lot 6065476, Linaris BIOZOL, Eching, Germany, 1:500, rabbit), anti-β-Actin (#A1978, lot 0000086304, Sigma, 1:10,000, mouse), anti-EGFR (#2232, lot 17, Cell Signaling, 1:1000, rabbit), anti-AKT1 (#2938, lot 4, Cell Signaling, 1:1000, rabbit), anti-GAPDH (#M20028M, lot 244888, Abmart, Berkeley Heights, NJ, USA, 1:5000, mouse), and anti-tubulin (alpha tubulin, #T6074, lot 024M4837, Merck KGaA (Darmstadt, Germany)., 1:10,000, mouse). Western blots were developed and quantified using an Amersham Imager 600 (GE Healthcare, Buckinghamshire, UK).
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7

SDS-PAGE and Western Blotting for Protein Analysis

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Protein samples from HEK 293T cells were resolved by 10% SDS‐polyacrylamide gel electrophoresis (SDS‐PAGE) and then transferred to Polyvinylidene fluoride (PVDF) membranes. Specific bands were detected with anti‐flag (1:1000) (Abmart), anti‐GAPDH (1:5000) (Abmart), respectively. Quantification of density in each band was performed by Image‐J software (NIH).
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8

Quantitative Analysis of MAPK Signaling Pathways

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Western blots were measured as previously described (Huang and Chen 2013 (link)). Briefly, active and total form of ERK1/2, JNK and p38 MAPK accumulation were detected by Western blot analysis with using the following antigenes: phospho-P44/42MAPK (ERK 1/2) Thr202–Tyr204 (1:2000), phospho-SAPK/JNK Thr183–Tyr185 (1:1000), phospho-p38 MAPK (Thr180–Tyr182) (1:1000) (Cell Signaling Technology, Beverly, MA, USA), anti-GAPDH (Abmart, Shanghai, China), and a goat anti-rabbit horseradish peroxidase-conjugated secondary antibody (1:5000 dilution, Santa Cruz). Bands were visualized by means of enhanced chemiluminescence. Then NIH Image J program was used to quantify the results after scanning.
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9

Protein Expression Analysis in HEK293 Cells

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Protein samples from HEK293 cells were resolved by 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to Polyvinylidene fluoride (PVDF) membranes and blotted with the desired antibodies. Specific bands were detected with anti-His (1:1000) (Abmart), anti-GAPDH (1:5000) (Abmart), respectively. Quantification of density in each band was performed as detailed previously [18 (link)].
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10

Insulin Signaling Pathway Analysis

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Anti-hnRNP A1, anti-ATF4, anti-CHOP, anti-Akt, anti-IRS-1, anti-Tubulin, and anti-GLUT4 were purchased from Santa Cruz. Anti-phospho-eIF2 (Ser51), anti-fatty acid synthase, anti-IR, anti-phospho-IR (Y1105/1151) anti-phospho-IRS-1 (Y986), anti-phospho-Akt (Ser473), anti-phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204), anti-p44/42 MAPK (Erk1/2), anti-phospho-AMPKα (Thr172), anti-AMPKα, anti-phospho-Akt (Ser473), anti-phospho-IR (Y1105/1151), anti-IR, anti-GSK-3β (3D10), anti-GS, and anti-p-GS (Ser641) were purchased from Cell Signaling Technology. Anti-phospho-GSK-3β (Ser9) was purchased from Epitomics. Anti-Lamin B1 was purchased from Proteintech Group. Anti-Actin and anti-GAPDH were purchased from Abmart. Insulin was purchased from Wepon. 2-NBDG (2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl) Amino)-2-deoxyglucose) was purchased from Thermo Scientific. The siRNA-hnRNP A1 (m) and siRNA-Ctrl were purchased from Santa Cruz. TG test kit, Glu test kit, TC test kit, ALT, and AST test kits were purchased from Nanjing Jiancheng Bioengineering Institute. Insulin ELISA kit was purchased from ALPCO.
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