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115 protocols using atp bioluminescence assay kit hs 2

1

Measuring ATP Production in Permeabilized Renal Cells

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ATP production rate was measured in digitonin-permeabilized RPTC (0.01%
final concentration) respiring at state 3 using the method of Borkan et al. (1993) (link), modified as described
previously (Nowak et al., 2006 (link)). The
assay was carried out using 5 mM glutamate + 5 mM malate or 10 mM succinate +
0.1 μM rotenone as the energizing substrates. The reaction was terminated
by adding an aliquot of ice-cold perchloric acid (3% final concentration) and
the suspension was spun down (15,000×g for 1 min). The supernatant was
neutralized to pH 7.5 and analyzed for ATP content using the luciferase method
and ATP Bioluminescence Assay Kit HS II (Roche, Mannheim, Germany).
Intracellular ATP content was measured in freshly prepared RPTC lysates
using the luciferase method and ATP Bioluminescence Assay Kit HS II as described
previously (Nowak et al., 2004 (link)).
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2

Cellular ATP Quantification by Bioluminescence

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Cellular ATP levels were determined using the ATP Bioluminescence Assay Kit HS II (Roche, Mannheim, Germany). Luminescence was measured with a TD-20/20 luminometer (Turner Designs, Sunnyvale, CA). Data were normalized to total protein and cellular ATP levels were expressed as fmol/μg protein.
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3

ATP Content Measurement in Fly Thoraces

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For all wing posture assays, male flies at 7-day and 14–15-day old and aged at 29°C were used. 20 male flies were collected/raised in one vial and 3 independent vials were counted per genotype. Measurements of ATP contents in thoracic muscle were performed as described previously (Gehrke et al., 2015 (link)), using a luciferase-based bioluminescence assay (ATP Bioluminescence Assay Kit HS II, Roche Applied Science). For each test, three thoraces were dissected by removing heads, wings, legs and abdomen from whole flies, and the remaining part quickly homogenized in 100 μl lysis buffer. The tissue lysates were then boiled for 5 min at 100°C and briefly cleared by centrifugation at 20,000 g for 2 mins. The supernatant was transferred to a new tube and kept on ice. 2.5 μl of cleared tissue lysate was-mixed with 187.5 μl dilution buffer and 10 μl luciferase reagent.The luminescence signal wasimmediately measured by a Lumat LB 9507 tube luminometer (Berthold Technologies). For each genotype or drug treatment group, at least 3~4 independent tests were assayed.
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4

ATP Bioluminescence Assay for HCMs

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ATP content was determined with the ATP Bioluminescence Assay Kit HS II (Roche Molecular Biochemicals, South San Francisco, CA, USA), according to the manufacturer's instructions. Briefly, HCMs were washed twice with cold PBS, collected, lysed and mixed with an equal amount of dilution buffer. Lysates were centrifuged at 21100 × g for 10 min at 4 °C, and the supernatant was mixed with an equal amount of luciferase reagent. Luminescence was measured by a fluorescence microplate (TECAN, infinite F200 PRO). ATP amounts were calculated from a log–log graph generated for the ATP standard using Magellan software (Rodenberg, Germany). ATP amounts were normalized to protein and presented as percent relative to control. The ATP average for controls was 35 nmol/mg protein, consistent with the reported range. The standard curve linear range was 10−6 to 10−10m.
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5

Quantify Intracellular ATP in DRG Neurons

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ATP Bioluminescence Assay Kit HS II (11699709001, Roche) was used to measure intracellular ATP content. DRG neurons were seeded in 96-well plates (104/well). After treatment, DRGs were trypsinized (0.125% trypsin), neutralized, collected, washed, re-suspended and each sample divided into two aliquots. One aliquot was used for protein measurements using Bradford reagent (Biorad). Second aliquot was transferred to black-wall 96-well plates for ATP determination using manufacturer’s protocol. Briefly, DRGs were lysed with lysis reagent followed by the addition of an equal amount (25 μl) dilution buffer. Freshly prepared luciferase reagent was added and luminescence measured immediately using TECAN F200 Pro plate Reader (TECAN, San Jose, CA). ATP concentrations were calculated from a log-log plot of the standard curve, normalized to protein amounts and expressed as nmol/mg protein.
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6

Mycobacterial ATP Production Under Drug Exposure

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Mtb or Mm in the exponential phase of growth was exposed
to 0.4, 0.1, 0.025, or 0 μM BDQ in combination with 20, 5, or
0 μM 2 or 35 for 96 h. Aliquots (1.5
mL) of bacterial suspension were removed and mixed with 3 mL of boiling
Tris-EDTA reagent (100 mM Tris, 4 mM EDTA, pH 7.75); and cells were
lysed for 2 min with glass beads, heated at 100 °C for 5 min,
and cooled on ice. Cell debris was removed by centrifugation. Supernatants
were collected; an equal volume of luciferase reagent (ATP Bioluminescence
Assay Kit HS II, Roche) was added to the supernatants; and luminescence
was measured. ATP was measured with an ATP Colorimetric/Fluorometric
Assay Kit (BioVision Research Products) according to the manufacturer’s
protocol. The survival of mycobacteria was measured by plating them
on 7H11 agar plates and counting CFUs to normalize the ATP concentration
to the number of live mycobacterial cells.
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7

Quantifying ATP Levels in Bone Marrow Cells

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Total bone marrow cells were isolated from Cebpa-cre+ x Atg7f/f and littermate controls. Ly6G+ cells (which include MM, BC, PMN) were purified using MACS columns (Miltenyi Biotec). Cell count was normalized to 1x106 cells per sample and ATP levels from cell pellets were determined by using the luciferase based ATP Bioluminescence Assay Kit HS II (Roche Applied Science). ATP concentration was calculated from intersection of sample luminescence values with ATP standard. Independent biological replicates represent individual mice in each experiment.
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8

Mitochondrial ATP Content Quantification

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Mitochondrial ATP content was determined using the ATP Bioluminescence Assay Kit HS II (Roche Molecular Biochemicals, Indianapolis, IN). Freshly isolated mitochondrial pellets were extracted according to manufacturer’s instructions with some modifications (Singh, Englander, 2012 (link)), sonicated (Sonic Dismembrator Model 100, Fisher Scientific) and centrifuged at 16000 g for 8 minutes at 4°C. The supernatant was collected, diluted with Tris-acetate buffer pH 7.6 and 50 μl aliquots were transferred to black microtiter plates and mixed with equal volume of the luciferase reagent (ATP Bioluminescence Assay Kit HS lI). Measurements of luminescence were at 5-second integration time (TECAN Genios plate reader). ATP amounts were calculated from log-log graphs generated for ATP standard using Magellan software and normalized to mitochondrial protein.
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9

ATP Quantification by Bioluminescence Assay

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ATP contents were measured by using the ATP bioluminescence assay kit HSII (Roche Applied Science, Germany) according to the manufacturer's instructions. Briefly, cell and worms were washed with PBS and lysed with lysis buffer. The lysates were boiled for 15 min and centrifuged at 15,000 g for 5 min. The supernatants were recovered as samples. Fifty microliters of each sample or standard was transferred into a disposable cuvette and 50 µL of luciferase reagent was added to it. After mixing, the light emitted was measured by using a TD−20/20 Turner Designs luminometer (Promega, Madison, WI). The blank value (no ATP) was subtracted from each sample's raw data. Final ATP concentrations were calculated from the linear part of a standard curve and normalized with each sample's protein concentration measured by BCA method.
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10

ATP Quantification in Regenerating Trunks

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ATP levels were measured by using an ATP bioluminescence assay kit HS II (Roche) according to the manufacturer’s instructions. Regenerating trunks were incubated in cell lysis reagent and boiled for 15 min at 100°C. Then, samples were sonicated for 4 cycles of 30′′. Luciferase reagent was added to the samples, and luminescence was measured by the Mithras LB940 plate reader (Berthold Technologies) using the injection function. Three biological replicates consisting of five trunks at 48hR were used per condition, and each sample was replicated three times in each ATP experiment. Protein content was measured by the Bradford method (Bio‐Rad Protein Assay).
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