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7 protocols using fsx100 system

1

Immunofluorescence and Flow Cytometry Analysis

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Cells were fixed in 4% paraformaldehyde-PBS solution. For visualization of intracellular markers, cells were permeabilized with 0.1% Triton X-100-PBS solution, blocked with 2% BSA-PBS solution for 1 hr at room temperature, and incubated overnight at 4°C with primary antibodies as listed in Table S4. Appropriate fluorescence-tagged secondary antibodies (Molecular Probes and Vector Laboratories) were used for visualization. Cells were mounted in DAPI mounting medium (Vector Laboratories), and images were obtained using an Olympus IX71 microscope equipped with a DP71 digital camera or Olympus FSX100 system. MetaMorph Microscopy Automation and Image Analysis Software (Molecular Devices) were used to count positive cells in seven to ten randomly selected images at a final magnification of ×200 from each of three independent experiments. For flow cytometry, cells were dissociated into single cells using GIBCO Cell Dissociation Buffer (Invitrogen) and incubated in 1% BSA-PBS solution with the appropriate antibodies as listed in Table S4. For unconjugated primary antibodies, the cells were incubated with Alexa-Flour 488-conjugated anti-mouse IgG/IgM (Molecular Probes) for raising suitable secondary antibodies. Flow cytometry was performed using FACSCalibur (BD Biosciences) and analyzed using WinMDI 2.8 or FACSVerse (BD Biosciences) and FlowJo software.
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2

Histological Analysis of Adipose, Pancreas, and Liver

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Samples of adipose tissue, pancreas, and liver were fixed in 4% paraformaldehyde in phosphate buffer solution (Wako) for 24 h, embedded in paraffin, sectioned at 4 μm, and stained with hematoxylin and eosin. For immunohistochemistry, paraffin-embedded sections were stained with monoclonal anti-UCP1 (dilution, 1:200; Abcam, Cambridge, MA, USA), anti-insulin (Histofine, Nichirei, Tokyo, Japan), anti-Ki67 (dilution, 1:1000; Abcam, Cambridge, MA, USA), and anti-F4/80 (AbD Serotec, Oxford, UK) antibodies. Images were acquired by using an FSX100 system (Olympus, Tokyo, Japan), and the UCP1 and F4/80 areas were evaluated by using cellSens Dimension software version 1.6 (Olympus). Histologic images were analyzed to calculate the sizes of adipocytes and insulin- and Ki67-positive areas by using Image J software (National Institutes of Health, Bethesda, MD, USA). For the analysis, 5 random images were captured for every sample.
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3

3D Fluorescence Imaging of Intestinal Tissues

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3-D fluorescence images were acquired by spinning disk confocal microscopy (Dragonfly, Andor Technology Ltd., Belfast, UK) on an IX83 (Olympus Corp. Tokyo, Japan) device through a UCPLFLN 20× objective lens (Olympus, numerical aperture [NA], 0.7) using a 405 nm laser for DAPI staining (blue), a 488 nm laser for GFP fluorescence imaging (green), and a 561 nm laser for tdTomato fluorescence imaging (red). Data were collected in Spinning Disk 40 μm pinhole mode on a scientific complementary metal oxide semiconductor (sCMOS) camera (Zyla4.2Plus USB3) (Andor Technologies), which had a measured pixel size of 0.95 μm × 0.95 μm. Using the Z scan mode, each sample was scanned every 2.5 μm in small intestine and colon. Acquired microscopic images were further processed by the deconvolution algorithm for 3D volume reconstruction. 2-D images were acquired by fluorescent microscopy with the FSX100 system (Olympus Corp., Tokyo, Japan).
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4

Quantifying Lung Fibrosis via Trichrome Staining

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Lung sections were stained with Masson trichrome, and then each slide was scanned completely in a zigzag fashion and the percentage of fibrotic area in the whole lung field was assessed. Brightfield images of Masson trichrome-stained slides were made on an FSX100 system (Olympus, Tokyo, Japan) and the fibrotic area expressed as a percentage of the whole lung field was analyzed by using CellSens Dimension software version 1.6 (Olympus).
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5

Histological Analysis of Metabolic Tissues

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Samples of adipose tissue, pancreas, and liver were fixed in 4% paraformaldehyde in phosphate buffer solution (Wako) for 24 h at room temperature, embedded in paraffin, sectioned at 4 μm, and stained with haematoxylin and eosin. For immunohistochemistry, paraffin-embedded sections were stained with monoclonal anti-insulin (Histofine; Nichirei, Tokyo, Japan), anti-Ki67 (dilution, 1:1000; Abcam, Cambridge, MA, USA), and anti-F4/80 (AbD Serotec, Oxford, UK) antibodies. Images were acquired by using an FSX100 system (Olympus, Tokyo, Japan), and the F4/80-positive area was quantified by using cellSens Dimension software (version 1.6, Olympus). Histologic images were analysed to calculate the sizes of adipocytes and of the insulin- and Ki67-positive areas by using Image J software (National Institutes of Health, Bethesda, MD, USA). For the analyses, 5 random images were captured from each sample.
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6

Lung Fibrosis Quantification Protocol

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Lung sections were stained with Masson trichrome, and then each slide was scanned completely in a zigzag fashion, and the percentage of fibrotic area in the whole lung field was assessed. Brightfield images of Masson trichrome-stained slides were acquired on an FSX100 system (Olympus, Tokyo, Japan) and the fibrotic area (expressed as a percentage of the whole lung field) was analyzed by using CellSens Dimension software version 1.6 (Olympus).
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7

Immunofluorescent Analysis of Cellular Markers

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Cells were fixed in 4% paraformaldehyde, permeabilized and stained with the primary antibodies targeting MBP (Abcam, ab7349, 1:100), cleaved caspase-3 (Cell Signaling Technology, 9661, 1:100) and Iba-1 (Wako, 019-19741, 1:100), followed by the appropriate Alexa Fluor 488- or 594-labelled secondary antibodies (Molecular Probes). DAPI counterstaining was used for nuclei visualization. Cell images were captured with an Olympus IX71 microscope and DP71 digital camera or Olympus FSX100 system. Iba-1-positive cells in the selected regions were counted using Image J.
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